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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism oih: Oceanobacillus iheyensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
oih00010 Glycolysis / Gluconeogenesis SBML MML
oih00020 Citrate cycle (TCA cycle) SBML MML
oih00030 Pentose phosphate pathway SBML MML
oih00031 (Undocumented) SBML MML
oih00040 Pentose and glucuronate interconversions SBML MML
oih00051 Fructose and mannose metabolism SBML MML
oih00052 Galactose metabolism SBML MML
oih00053 Ascorbate and aldarate metabolism SBML MML
oih00061 Fatty acid biosynthesis SBML MML
oih00062 Fatty acid elongation in mitochondria SBML MML
oih00071 Fatty acid metabolism SBML MML
oih00072 Synthesis and degradation of ketone bodies SBML MML
oih00100 (Undocumented) SBML MML
oih00120 (Undocumented) SBML MML
oih00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
oih00140 (Undocumented) SBML MML
oih00150 Androgen and estrogen metabolism SBML MML
oih00220 (Undocumented) SBML MML
oih00230 Purine metabolism SBML MML
oih00240 Pyrimidine metabolism SBML MML
oih00251 (Undocumented) SBML MML
oih00252 (Undocumented) SBML MML
oih00260 Glycine, serine and threonine metabolism SBML MML
oih00271 (Undocumented) SBML MML
oih00272 (Undocumented) SBML MML
oih00280 Valine, leucine and isoleucine degradation SBML MML
oih00281 Geraniol degradation SBML MML
oih00290 Valine, leucine and isoleucine biosynthesis SBML MML
oih00300 Lysine biosynthesis SBML MML
oih00310 Lysine degradation SBML MML
oih00311 Penicillin and cephalosporin biosynthesis SBML MML
oih00330 Arginine and proline metabolism SBML MML
oih00340 Histidine metabolism SBML MML
oih00350 Tyrosine metabolism SBML MML
oih00360 Phenylalanine metabolism SBML MML
oih00362 (Undocumented) SBML MML
oih00380 Tryptophan metabolism SBML MML
oih00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
oih00401 Novobiocin biosynthesis SBML MML
oih00410 beta-Alanine metabolism SBML MML
oih00430 Taurine and hypotaurine metabolism SBML MML
oih00450 Selenoamino acid metabolism SBML MML
oih00460 (Undocumented) SBML MML
oih00471 D-Glutamine and D-glutamate metabolism SBML MML
oih00472 D-Arginine and D-ornithine metabolism SBML MML
oih00473 D-Alanine metabolism SBML MML
oih00480 Glutathione metabolism SBML MML
oih00500 Starch and sucrose metabolism SBML MML
oih00520 Amino sugar and nucleotide sugar metabolism SBML MML
oih00521 Streptomycin biosynthesis SBML MML
oih00523 Polyketide sugar unit biosynthesis SBML MML
oih00530 (Undocumented) SBML MML
oih00550 Peptidoglycan biosynthesis SBML MML
oih00561 Glycerolipid metabolism SBML MML
oih00562 Inositol phosphate metabolism SBML MML
oih00564 Glycerophospholipid metabolism SBML MML
oih00590 Arachidonic acid metabolism SBML MML
oih00592 alpha-Linolenic acid metabolism SBML MML
oih00620 Pyruvate metabolism SBML MML
oih00624 1- and 2-Methylnaphthalene degradation SBML MML
oih00626 Naphthalene and anthracene degradation SBML MML
oih00630 Glyoxylate and dicarboxylate metabolism SBML MML
oih00632 (Undocumented) SBML MML
oih00640 Propanoate metabolism SBML MML
oih00641 3-Chloroacrylic acid degradation SBML MML
oih00650 Butanoate metabolism SBML MML
oih00660 C5-Branched dibasic acid metabolism SBML MML
oih00670 One carbon pool by folate SBML MML
oih00680 Methane metabolism SBML MML
oih00710 (Undocumented) SBML MML
oih00720 (Undocumented) SBML MML
oih00730 Thiamine metabolism SBML MML
oih00740 Riboflavin metabolism SBML MML
oih00750 Vitamin B6 metabolism SBML MML
oih00760 Nicotinate and nicotinamide metabolism SBML MML
oih00770 Pantothenate and CoA biosynthesis SBML MML
oih00780 Biotin metabolism SBML MML
oih00785 Lipoic acid metabolism SBML MML
oih00790 Folate biosynthesis SBML MML
oih00860 Porphyrin and chlorophyll metabolism SBML MML
oih00900 Terpenoid backbone biosynthesis SBML MML
oih00903 (Undocumented) SBML MML
oih00910 Nitrogen metabolism SBML MML
oih00920 Sulfur metabolism SBML MML
oih00930 Caprolactam degradation SBML MML
oih00941 (Undocumented) SBML MML
oih00970 Aminoacyl-tRNA biosynthesis SBML MML
oih00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
oih00982 (Undocumented) SBML MML
oih00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.