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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism oan: Ochrobactrum anthropi

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
oan00010 Glycolysis / Gluconeogenesis SBML MML
oan00020 Citrate cycle (TCA cycle) SBML MML
oan00030 Pentose phosphate pathway SBML MML
oan00031 (Undocumented) SBML MML
oan00040 Pentose and glucuronate interconversions SBML MML
oan00051 Fructose and mannose metabolism SBML MML
oan00052 Galactose metabolism SBML MML
oan00053 Ascorbate and aldarate metabolism SBML MML
oan00061 Fatty acid biosynthesis SBML MML
oan00062 Fatty acid elongation in mitochondria SBML MML
oan00071 Fatty acid metabolism SBML MML
oan00072 Synthesis and degradation of ketone bodies SBML MML
oan00100 (Undocumented) SBML MML
oan00120 (Undocumented) SBML MML
oan00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
oan00220 (Undocumented) SBML MML
oan00230 Purine metabolism SBML MML
oan00240 Pyrimidine metabolism SBML MML
oan00251 (Undocumented) SBML MML
oan00252 (Undocumented) SBML MML
oan00260 Glycine, serine and threonine metabolism SBML MML
oan00271 (Undocumented) SBML MML
oan00272 (Undocumented) SBML MML
oan00280 Valine, leucine and isoleucine degradation SBML MML
oan00281 Geraniol degradation SBML MML
oan00290 Valine, leucine and isoleucine biosynthesis SBML MML
oan00300 Lysine biosynthesis SBML MML
oan00310 Lysine degradation SBML MML
oan00311 Penicillin and cephalosporin biosynthesis SBML MML
oan00330 Arginine and proline metabolism SBML MML
oan00340 Histidine metabolism SBML MML
oan00350 Tyrosine metabolism SBML MML
oan00360 Phenylalanine metabolism SBML MML
oan00361 gamma-Hexachlorocyclohexane degradation SBML MML
oan00362 (Undocumented) SBML MML
oan00364 Fluorobenzoate degradation SBML MML
oan00380 Tryptophan metabolism SBML MML
oan00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
oan00401 Novobiocin biosynthesis SBML MML
oan00410 beta-Alanine metabolism SBML MML
oan00430 Taurine and hypotaurine metabolism SBML MML
oan00440 Phosphonate and phosphinate metabolism SBML MML
oan00450 Selenoamino acid metabolism SBML MML
oan00460 (Undocumented) SBML MML
oan00471 D-Glutamine and D-glutamate metabolism SBML MML
oan00472 D-Arginine and D-ornithine metabolism SBML MML
oan00473 D-Alanine metabolism SBML MML
oan00480 Glutathione metabolism SBML MML
oan00500 Starch and sucrose metabolism SBML MML
oan00520 Amino sugar and nucleotide sugar metabolism SBML MML
oan00521 Streptomycin biosynthesis SBML MML
oan00523 Polyketide sugar unit biosynthesis SBML MML
oan00530 (Undocumented) SBML MML
oan00540 Lipopolysaccharide biosynthesis SBML MML
oan00550 Peptidoglycan biosynthesis SBML MML
oan00561 Glycerolipid metabolism SBML MML
oan00562 Inositol phosphate metabolism SBML MML
oan00564 Glycerophospholipid metabolism SBML MML
oan00565 Ether lipid metabolism SBML MML
oan00592 alpha-Linolenic acid metabolism SBML MML
oan00620 Pyruvate metabolism SBML MML
oan00622 Toluene and xylene degradation SBML MML
oan00623 2,4-Dichlorobenzoate degradation SBML MML
oan00624 1- and 2-Methylnaphthalene degradation SBML MML
oan00626 Naphthalene and anthracene degradation SBML MML
oan00627 1,4-Dichlorobenzene degradation SBML MML
oan00628 Fluorene degradation SBML MML
oan00630 Glyoxylate and dicarboxylate metabolism SBML MML
oan00631 1,2-Dichloroethane degradation SBML MML
oan00632 (Undocumented) SBML MML
oan00640 Propanoate metabolism SBML MML
oan00641 3-Chloroacrylic acid degradation SBML MML
oan00642 Ethylbenzene degradation SBML MML
oan00643 Styrene degradation SBML MML
oan00650 Butanoate metabolism SBML MML
oan00660 C5-Branched dibasic acid metabolism SBML MML
oan00670 One carbon pool by folate SBML MML
oan00680 Methane metabolism SBML MML
oan00710 (Undocumented) SBML MML
oan00720 (Undocumented) SBML MML
oan00730 Thiamine metabolism SBML MML
oan00740 Riboflavin metabolism SBML MML
oan00750 Vitamin B6 metabolism SBML MML
oan00760 Nicotinate and nicotinamide metabolism SBML MML
oan00770 Pantothenate and CoA biosynthesis SBML MML
oan00780 Biotin metabolism SBML MML
oan00785 Lipoic acid metabolism SBML MML
oan00790 Folate biosynthesis SBML MML
oan00791 Atrazine degradation SBML MML
oan00860 Porphyrin and chlorophyll metabolism SBML MML
oan00900 Terpenoid backbone biosynthesis SBML MML
oan00903 (Undocumented) SBML MML
oan00910 Nitrogen metabolism SBML MML
oan00920 Sulfur metabolism SBML MML
oan00930 Caprolactam degradation SBML MML
oan00940 (Undocumented) SBML MML
oan00950 (Undocumented) SBML MML
oan00960 (Undocumented) SBML MML
oan00970 Aminoacyl-tRNA biosynthesis SBML MML
oan00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
oan00982 (Undocumented) SBML MML
oan00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.