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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism nwi: Nitrobacter winogradskyi

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
nwi00010 Glycolysis / Gluconeogenesis SBML MML
nwi00020 Citrate cycle (TCA cycle) SBML MML
nwi00030 Pentose phosphate pathway SBML MML
nwi00031 (Undocumented) SBML MML
nwi00040 Pentose and glucuronate interconversions SBML MML
nwi00051 Fructose and mannose metabolism SBML MML
nwi00052 Galactose metabolism SBML MML
nwi00053 Ascorbate and aldarate metabolism SBML MML
nwi00061 Fatty acid biosynthesis SBML MML
nwi00071 Fatty acid metabolism SBML MML
nwi00072 Synthesis and degradation of ketone bodies SBML MML
nwi00100 (Undocumented) SBML MML
nwi00120 (Undocumented) SBML MML
nwi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
nwi00220 (Undocumented) SBML MML
nwi00230 Purine metabolism SBML MML
nwi00240 Pyrimidine metabolism SBML MML
nwi00251 (Undocumented) SBML MML
nwi00252 (Undocumented) SBML MML
nwi00260 Glycine, serine and threonine metabolism SBML MML
nwi00271 (Undocumented) SBML MML
nwi00272 (Undocumented) SBML MML
nwi00280 Valine, leucine and isoleucine degradation SBML MML
nwi00281 Geraniol degradation SBML MML
nwi00290 Valine, leucine and isoleucine biosynthesis SBML MML
nwi00300 Lysine biosynthesis SBML MML
nwi00310 Lysine degradation SBML MML
nwi00330 Arginine and proline metabolism SBML MML
nwi00340 Histidine metabolism SBML MML
nwi00350 Tyrosine metabolism SBML MML
nwi00360 Phenylalanine metabolism SBML MML
nwi00362 (Undocumented) SBML MML
nwi00380 Tryptophan metabolism SBML MML
nwi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
nwi00401 Novobiocin biosynthesis SBML MML
nwi00410 beta-Alanine metabolism SBML MML
nwi00430 Taurine and hypotaurine metabolism SBML MML
nwi00450 Selenoamino acid metabolism SBML MML
nwi00460 (Undocumented) SBML MML
nwi00471 D-Glutamine and D-glutamate metabolism SBML MML
nwi00472 D-Arginine and D-ornithine metabolism SBML MML
nwi00473 D-Alanine metabolism SBML MML
nwi00480 Glutathione metabolism SBML MML
nwi00500 Starch and sucrose metabolism SBML MML
nwi00520 Amino sugar and nucleotide sugar metabolism SBML MML
nwi00521 Streptomycin biosynthesis SBML MML
nwi00523 Polyketide sugar unit biosynthesis SBML MML
nwi00530 (Undocumented) SBML MML
nwi00540 Lipopolysaccharide biosynthesis SBML MML
nwi00550 Peptidoglycan biosynthesis SBML MML
nwi00561 Glycerolipid metabolism SBML MML
nwi00562 Inositol phosphate metabolism SBML MML
nwi00564 Glycerophospholipid metabolism SBML MML
nwi00590 Arachidonic acid metabolism SBML MML
nwi00592 alpha-Linolenic acid metabolism SBML MML
nwi00620 Pyruvate metabolism SBML MML
nwi00622 Toluene and xylene degradation SBML MML
nwi00624 1- and 2-Methylnaphthalene degradation SBML MML
nwi00626 Naphthalene and anthracene degradation SBML MML
nwi00630 Glyoxylate and dicarboxylate metabolism SBML MML
nwi00632 (Undocumented) SBML MML
nwi00640 Propanoate metabolism SBML MML
nwi00641 3-Chloroacrylic acid degradation SBML MML
nwi00650 Butanoate metabolism SBML MML
nwi00660 C5-Branched dibasic acid metabolism SBML MML
nwi00670 One carbon pool by folate SBML MML
nwi00680 Methane metabolism SBML MML
nwi00710 (Undocumented) SBML MML
nwi00720 (Undocumented) SBML MML
nwi00730 Thiamine metabolism SBML MML
nwi00740 Riboflavin metabolism SBML MML
nwi00750 Vitamin B6 metabolism SBML MML
nwi00760 Nicotinate and nicotinamide metabolism SBML MML
nwi00770 Pantothenate and CoA biosynthesis SBML MML
nwi00780 Biotin metabolism SBML MML
nwi00785 Lipoic acid metabolism SBML MML
nwi00790 Folate biosynthesis SBML MML
nwi00860 Porphyrin and chlorophyll metabolism SBML MML
nwi00900 Terpenoid backbone biosynthesis SBML MML
nwi00903 (Undocumented) SBML MML
nwi00910 Nitrogen metabolism SBML MML
nwi00920 Sulfur metabolism SBML MML
nwi00930 Caprolactam degradation SBML MML
nwi00940 (Undocumented) SBML MML
nwi00950 (Undocumented) SBML MML
nwi00960 (Undocumented) SBML MML
nwi00970 Aminoacyl-tRNA biosynthesis SBML MML
nwi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
nwi00982 (Undocumented) SBML MML
nwi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.