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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism nca: Nocardioides sp. JS614

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
nca00010 Glycolysis / Gluconeogenesis SBML MML
nca00020 Citrate cycle (TCA cycle) SBML MML
nca00030 Pentose phosphate pathway SBML MML
nca00031 (Undocumented) SBML MML
nca00040 Pentose and glucuronate interconversions SBML MML
nca00051 Fructose and mannose metabolism SBML MML
nca00052 Galactose metabolism SBML MML
nca00053 Ascorbate and aldarate metabolism SBML MML
nca00061 Fatty acid biosynthesis SBML MML
nca00062 Fatty acid elongation in mitochondria SBML MML
nca00071 Fatty acid metabolism SBML MML
nca00072 Synthesis and degradation of ketone bodies SBML MML
nca00100 (Undocumented) SBML MML
nca00120 (Undocumented) SBML MML
nca00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
nca00140 (Undocumented) SBML MML
nca00150 Androgen and estrogen metabolism SBML MML
nca00220 (Undocumented) SBML MML
nca00230 Purine metabolism SBML MML
nca00232 Caffeine metabolism SBML MML
nca00240 Pyrimidine metabolism SBML MML
nca00251 (Undocumented) SBML MML
nca00252 (Undocumented) SBML MML
nca00260 Glycine, serine and threonine metabolism SBML MML
nca00271 (Undocumented) SBML MML
nca00272 (Undocumented) SBML MML
nca00280 Valine, leucine and isoleucine degradation SBML MML
nca00281 Geraniol degradation SBML MML
nca00290 Valine, leucine and isoleucine biosynthesis SBML MML
nca00300 Lysine biosynthesis SBML MML
nca00310 Lysine degradation SBML MML
nca00311 Penicillin and cephalosporin biosynthesis SBML MML
nca00330 Arginine and proline metabolism SBML MML
nca00340 Histidine metabolism SBML MML
nca00350 Tyrosine metabolism SBML MML
nca00360 Phenylalanine metabolism SBML MML
nca00361 gamma-Hexachlorocyclohexane degradation SBML MML
nca00362 (Undocumented) SBML MML
nca00364 Fluorobenzoate degradation SBML MML
nca00380 Tryptophan metabolism SBML MML
nca00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
nca00401 Novobiocin biosynthesis SBML MML
nca00410 beta-Alanine metabolism SBML MML
nca00430 Taurine and hypotaurine metabolism SBML MML
nca00450 Selenoamino acid metabolism SBML MML
nca00460 (Undocumented) SBML MML
nca00471 D-Glutamine and D-glutamate metabolism SBML MML
nca00472 D-Arginine and D-ornithine metabolism SBML MML
nca00473 D-Alanine metabolism SBML MML
nca00480 Glutathione metabolism SBML MML
nca00500 Starch and sucrose metabolism SBML MML
nca00510 (Undocumented) SBML MML
nca00520 Amino sugar and nucleotide sugar metabolism SBML MML
nca00521 Streptomycin biosynthesis SBML MML
nca00530 (Undocumented) SBML MML
nca00550 Peptidoglycan biosynthesis SBML MML
nca00561 Glycerolipid metabolism SBML MML
nca00562 Inositol phosphate metabolism SBML MML
nca00564 Glycerophospholipid metabolism SBML MML
nca00590 Arachidonic acid metabolism SBML MML
nca00592 alpha-Linolenic acid metabolism SBML MML
nca00620 Pyruvate metabolism SBML MML
nca00622 Toluene and xylene degradation SBML MML
nca00624 1- and 2-Methylnaphthalene degradation SBML MML
nca00627 1,4-Dichlorobenzene degradation SBML MML
nca00628 Fluorene degradation SBML MML
nca00629 Carbazole degradation SBML MML
nca00630 Glyoxylate and dicarboxylate metabolism SBML MML
nca00631 1,2-Dichloroethane degradation SBML MML
nca00632 (Undocumented) SBML MML
nca00640 Propanoate metabolism SBML MML
nca00641 3-Chloroacrylic acid degradation SBML MML
nca00642 Ethylbenzene degradation SBML MML
nca00643 Styrene degradation SBML MML
nca00650 Butanoate metabolism SBML MML
nca00660 C5-Branched dibasic acid metabolism SBML MML
nca00670 One carbon pool by folate SBML MML
nca00680 Methane metabolism SBML MML
nca00710 (Undocumented) SBML MML
nca00720 (Undocumented) SBML MML
nca00730 Thiamine metabolism SBML MML
nca00740 Riboflavin metabolism SBML MML
nca00750 Vitamin B6 metabolism SBML MML
nca00760 Nicotinate and nicotinamide metabolism SBML MML
nca00770 Pantothenate and CoA biosynthesis SBML MML
nca00780 Biotin metabolism SBML MML
nca00785 Lipoic acid metabolism SBML MML
nca00790 Folate biosynthesis SBML MML
nca00791 Atrazine degradation SBML MML
nca00860 Porphyrin and chlorophyll metabolism SBML MML
nca00900 Terpenoid backbone biosynthesis SBML MML
nca00903 (Undocumented) SBML MML
nca00904 (Undocumented) SBML MML
nca00910 Nitrogen metabolism SBML MML
nca00920 Sulfur metabolism SBML MML
nca00930 Caprolactam degradation SBML MML
nca00970 Aminoacyl-tRNA biosynthesis SBML MML
nca00982 (Undocumented) SBML MML
nca00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.