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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism nar: Novosphingobium aromaticivorans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
nar00010 Glycolysis / Gluconeogenesis SBML MML
nar00020 Citrate cycle (TCA cycle) SBML MML
nar00030 Pentose phosphate pathway SBML MML
nar00031 (Undocumented) SBML MML
nar00040 Pentose and glucuronate interconversions SBML MML
nar00051 Fructose and mannose metabolism SBML MML
nar00052 Galactose metabolism SBML MML
nar00053 Ascorbate and aldarate metabolism SBML MML
nar00061 Fatty acid biosynthesis SBML MML
nar00071 Fatty acid metabolism SBML MML
nar00072 Synthesis and degradation of ketone bodies SBML MML
nar00100 (Undocumented) SBML MML
nar00120 (Undocumented) SBML MML
nar00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
nar00220 (Undocumented) SBML MML
nar00230 Purine metabolism SBML MML
nar00240 Pyrimidine metabolism SBML MML
nar00251 (Undocumented) SBML MML
nar00252 (Undocumented) SBML MML
nar00260 Glycine, serine and threonine metabolism SBML MML
nar00271 (Undocumented) SBML MML
nar00272 (Undocumented) SBML MML
nar00280 Valine, leucine and isoleucine degradation SBML MML
nar00281 Geraniol degradation SBML MML
nar00290 Valine, leucine and isoleucine biosynthesis SBML MML
nar00300 Lysine biosynthesis SBML MML
nar00310 Lysine degradation SBML MML
nar00330 Arginine and proline metabolism SBML MML
nar00340 Histidine metabolism SBML MML
nar00350 Tyrosine metabolism SBML MML
nar00360 Phenylalanine metabolism SBML MML
nar00361 gamma-Hexachlorocyclohexane degradation SBML MML
nar00362 (Undocumented) SBML MML
nar00364 Fluorobenzoate degradation SBML MML
nar00380 Tryptophan metabolism SBML MML
nar00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
nar00401 Novobiocin biosynthesis SBML MML
nar00410 beta-Alanine metabolism SBML MML
nar00430 Taurine and hypotaurine metabolism SBML MML
nar00450 Selenoamino acid metabolism SBML MML
nar00460 (Undocumented) SBML MML
nar00471 D-Glutamine and D-glutamate metabolism SBML MML
nar00473 D-Alanine metabolism SBML MML
nar00480 Glutathione metabolism SBML MML
nar00500 Starch and sucrose metabolism SBML MML
nar00520 Amino sugar and nucleotide sugar metabolism SBML MML
nar00521 Streptomycin biosynthesis SBML MML
nar00523 Polyketide sugar unit biosynthesis SBML MML
nar00530 (Undocumented) SBML MML
nar00540 Lipopolysaccharide biosynthesis SBML MML
nar00550 Peptidoglycan biosynthesis SBML MML
nar00561 Glycerolipid metabolism SBML MML
nar00562 Inositol phosphate metabolism SBML MML
nar00564 Glycerophospholipid metabolism SBML MML
nar00590 Arachidonic acid metabolism SBML MML
nar00592 alpha-Linolenic acid metabolism SBML MML
nar00620 Pyruvate metabolism SBML MML
nar00622 Toluene and xylene degradation SBML MML
nar00623 2,4-Dichlorobenzoate degradation SBML MML
nar00624 1- and 2-Methylnaphthalene degradation SBML MML
nar00626 Naphthalene and anthracene degradation SBML MML
nar00627 1,4-Dichlorobenzene degradation SBML MML
nar00628 Fluorene degradation SBML MML
nar00630 Glyoxylate and dicarboxylate metabolism SBML MML
nar00631 1,2-Dichloroethane degradation SBML MML
nar00632 (Undocumented) SBML MML
nar00640 Propanoate metabolism SBML MML
nar00641 3-Chloroacrylic acid degradation SBML MML
nar00642 Ethylbenzene degradation SBML MML
nar00643 Styrene degradation SBML MML
nar00650 Butanoate metabolism SBML MML
nar00660 C5-Branched dibasic acid metabolism SBML MML
nar00670 One carbon pool by folate SBML MML
nar00680 Methane metabolism SBML MML
nar00710 (Undocumented) SBML MML
nar00720 (Undocumented) SBML MML
nar00730 Thiamine metabolism SBML MML
nar00740 Riboflavin metabolism SBML MML
nar00750 Vitamin B6 metabolism SBML MML
nar00760 Nicotinate and nicotinamide metabolism SBML MML
nar00770 Pantothenate and CoA biosynthesis SBML MML
nar00780 Biotin metabolism SBML MML
nar00785 Lipoic acid metabolism SBML MML
nar00790 Folate biosynthesis SBML MML
nar00860 Porphyrin and chlorophyll metabolism SBML MML
nar00900 Terpenoid backbone biosynthesis SBML MML
nar00903 (Undocumented) SBML MML
nar00906 Carotenoid biosynthesis SBML MML
nar00910 Nitrogen metabolism SBML MML
nar00920 Sulfur metabolism SBML MML
nar00930 Caprolactam degradation SBML MML
nar00940 (Undocumented) SBML MML
nar00950 (Undocumented) SBML MML
nar00970 Aminoacyl-tRNA biosynthesis SBML MML
nar00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
nar00982 (Undocumented) SBML MML
nar00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.