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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mvn: Methanococcus vannielii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mvn00010 Glycolysis / Gluconeogenesis SBML MML
mvn00020 Citrate cycle (TCA cycle) SBML MML
mvn00030 Pentose phosphate pathway SBML MML
mvn00040 Pentose and glucuronate interconversions SBML MML
mvn00051 Fructose and mannose metabolism SBML MML
mvn00052 Galactose metabolism SBML MML
mvn00071 Fatty acid metabolism SBML MML
mvn00100 (Undocumented) SBML MML
mvn00120 (Undocumented) SBML MML
mvn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mvn00220 (Undocumented) SBML MML
mvn00230 Purine metabolism SBML MML
mvn00240 Pyrimidine metabolism SBML MML
mvn00251 (Undocumented) SBML MML
mvn00252 (Undocumented) SBML MML
mvn00260 Glycine, serine and threonine metabolism SBML MML
mvn00271 (Undocumented) SBML MML
mvn00272 (Undocumented) SBML MML
mvn00280 Valine, leucine and isoleucine degradation SBML MML
mvn00281 Geraniol degradation SBML MML
mvn00290 Valine, leucine and isoleucine biosynthesis SBML MML
mvn00300 Lysine biosynthesis SBML MML
mvn00330 Arginine and proline metabolism SBML MML
mvn00340 Histidine metabolism SBML MML
mvn00350 Tyrosine metabolism SBML MML
mvn00360 Phenylalanine metabolism SBML MML
mvn00362 (Undocumented) SBML MML
mvn00380 Tryptophan metabolism SBML MML
mvn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mvn00401 Novobiocin biosynthesis SBML MML
mvn00450 Selenoamino acid metabolism SBML MML
mvn00500 Starch and sucrose metabolism SBML MML
mvn00510 (Undocumented) SBML MML
mvn00520 Amino sugar and nucleotide sugar metabolism SBML MML
mvn00521 Streptomycin biosynthesis SBML MML
mvn00523 Polyketide sugar unit biosynthesis SBML MML
mvn00530 (Undocumented) SBML MML
mvn00550 Peptidoglycan biosynthesis SBML MML
mvn00564 Glycerophospholipid metabolism SBML MML
mvn00592 alpha-Linolenic acid metabolism SBML MML
mvn00620 Pyruvate metabolism SBML MML
mvn00624 1- and 2-Methylnaphthalene degradation SBML MML
mvn00625 (Undocumented) SBML MML
mvn00630 Glyoxylate and dicarboxylate metabolism SBML MML
mvn00632 (Undocumented) SBML MML
mvn00640 Propanoate metabolism SBML MML
mvn00642 Ethylbenzene degradation SBML MML
mvn00650 Butanoate metabolism SBML MML
mvn00660 C5-Branched dibasic acid metabolism SBML MML
mvn00670 One carbon pool by folate SBML MML
mvn00680 Methane metabolism SBML MML
mvn00710 (Undocumented) SBML MML
mvn00720 (Undocumented) SBML MML
mvn00730 Thiamine metabolism SBML MML
mvn00740 Riboflavin metabolism SBML MML
mvn00750 Vitamin B6 metabolism SBML MML
mvn00760 Nicotinate and nicotinamide metabolism SBML MML
mvn00770 Pantothenate and CoA biosynthesis SBML MML
mvn00780 Biotin metabolism SBML MML
mvn00790 Folate biosynthesis SBML MML
mvn00860 Porphyrin and chlorophyll metabolism SBML MML
mvn00900 Terpenoid backbone biosynthesis SBML MML
mvn00903 (Undocumented) SBML MML
mvn00910 Nitrogen metabolism SBML MML
mvn00920 Sulfur metabolism SBML MML
mvn00950 (Undocumented) SBML MML
mvn00960 (Undocumented) SBML MML
mvn00970 Aminoacyl-tRNA biosynthesis SBML MML
mvn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.