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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mul: Mycobacterium ulcerans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mul00010 Glycolysis / Gluconeogenesis SBML MML
mul00020 Citrate cycle (TCA cycle) SBML MML
mul00030 Pentose phosphate pathway SBML MML
mul00031 (Undocumented) SBML MML
mul00040 Pentose and glucuronate interconversions SBML MML
mul00051 Fructose and mannose metabolism SBML MML
mul00052 Galactose metabolism SBML MML
mul00061 Fatty acid biosynthesis SBML MML
mul00062 Fatty acid elongation in mitochondria SBML MML
mul00071 Fatty acid metabolism SBML MML
mul00072 Synthesis and degradation of ketone bodies SBML MML
mul00100 (Undocumented) SBML MML
mul00120 (Undocumented) SBML MML
mul00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mul00140 (Undocumented) SBML MML
mul00150 Androgen and estrogen metabolism SBML MML
mul00220 (Undocumented) SBML MML
mul00230 Purine metabolism SBML MML
mul00240 Pyrimidine metabolism SBML MML
mul00251 (Undocumented) SBML MML
mul00252 (Undocumented) SBML MML
mul00260 Glycine, serine and threonine metabolism SBML MML
mul00271 (Undocumented) SBML MML
mul00272 (Undocumented) SBML MML
mul00280 Valine, leucine and isoleucine degradation SBML MML
mul00281 Geraniol degradation SBML MML
mul00290 Valine, leucine and isoleucine biosynthesis SBML MML
mul00300 Lysine biosynthesis SBML MML
mul00310 Lysine degradation SBML MML
mul00311 Penicillin and cephalosporin biosynthesis SBML MML
mul00330 Arginine and proline metabolism SBML MML
mul00340 Histidine metabolism SBML MML
mul00350 Tyrosine metabolism SBML MML
mul00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
mul00360 Phenylalanine metabolism SBML MML
mul00361 gamma-Hexachlorocyclohexane degradation SBML MML
mul00362 (Undocumented) SBML MML
mul00363 Bisphenol A degradation SBML MML
mul00364 Fluorobenzoate degradation SBML MML
mul00380 Tryptophan metabolism SBML MML
mul00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mul00401 Novobiocin biosynthesis SBML MML
mul00410 beta-Alanine metabolism SBML MML
mul00430 Taurine and hypotaurine metabolism SBML MML
mul00450 Selenoamino acid metabolism SBML MML
mul00460 (Undocumented) SBML MML
mul00471 D-Glutamine and D-glutamate metabolism SBML MML
mul00472 D-Arginine and D-ornithine metabolism SBML MML
mul00473 D-Alanine metabolism SBML MML
mul00480 Glutathione metabolism SBML MML
mul00500 Starch and sucrose metabolism SBML MML
mul00510 (Undocumented) SBML MML
mul00520 Amino sugar and nucleotide sugar metabolism SBML MML
mul00521 Streptomycin biosynthesis SBML MML
mul00523 Polyketide sugar unit biosynthesis SBML MML
mul00530 (Undocumented) SBML MML
mul00550 Peptidoglycan biosynthesis SBML MML
mul00561 Glycerolipid metabolism SBML MML
mul00562 Inositol phosphate metabolism SBML MML
mul00564 Glycerophospholipid metabolism SBML MML
mul00565 Ether lipid metabolism SBML MML
mul00592 alpha-Linolenic acid metabolism SBML MML
mul00620 Pyruvate metabolism SBML MML
mul00621 (Undocumented) SBML MML
mul00622 Toluene and xylene degradation SBML MML
mul00624 1- and 2-Methylnaphthalene degradation SBML MML
mul00626 Naphthalene and anthracene degradation SBML MML
mul00627 1,4-Dichlorobenzene degradation SBML MML
mul00628 Fluorene degradation SBML MML
mul00630 Glyoxylate and dicarboxylate metabolism SBML MML
mul00631 1,2-Dichloroethane degradation SBML MML
mul00632 (Undocumented) SBML MML
mul00640 Propanoate metabolism SBML MML
mul00641 3-Chloroacrylic acid degradation SBML MML
mul00642 Ethylbenzene degradation SBML MML
mul00643 Styrene degradation SBML MML
mul00650 Butanoate metabolism SBML MML
mul00660 C5-Branched dibasic acid metabolism SBML MML
mul00670 One carbon pool by folate SBML MML
mul00680 Methane metabolism SBML MML
mul00710 (Undocumented) SBML MML
mul00720 (Undocumented) SBML MML
mul00730 Thiamine metabolism SBML MML
mul00740 Riboflavin metabolism SBML MML
mul00750 Vitamin B6 metabolism SBML MML
mul00760 Nicotinate and nicotinamide metabolism SBML MML
mul00770 Pantothenate and CoA biosynthesis SBML MML
mul00780 Biotin metabolism SBML MML
mul00785 Lipoic acid metabolism SBML MML
mul00790 Folate biosynthesis SBML MML
mul00791 Atrazine degradation SBML MML
mul00860 Porphyrin and chlorophyll metabolism SBML MML
mul00903 (Undocumented) SBML MML
mul00910 Nitrogen metabolism SBML MML
mul00920 Sulfur metabolism SBML MML
mul00930 Caprolactam degradation SBML MML
mul00940 (Undocumented) SBML MML
mul00941 (Undocumented) SBML MML
mul00960 (Undocumented) SBML MML
mul00970 Aminoacyl-tRNA biosynthesis SBML MML
mul00982 (Undocumented) SBML MML
mul00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.