This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mst: Methanosphaera stadtmanae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mst00010 Glycolysis / Gluconeogenesis SBML MML
mst00020 Citrate cycle (TCA cycle) SBML MML
mst00030 Pentose phosphate pathway SBML MML
mst00040 Pentose and glucuronate interconversions SBML MML
mst00051 Fructose and mannose metabolism SBML MML
mst00052 Galactose metabolism SBML MML
mst00071 Fatty acid metabolism SBML MML
mst00100 (Undocumented) SBML MML
mst00120 (Undocumented) SBML MML
mst00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mst00220 (Undocumented) SBML MML
mst00230 Purine metabolism SBML MML
mst00240 Pyrimidine metabolism SBML MML
mst00251 (Undocumented) SBML MML
mst00252 (Undocumented) SBML MML
mst00260 Glycine, serine and threonine metabolism SBML MML
mst00271 (Undocumented) SBML MML
mst00272 (Undocumented) SBML MML
mst00280 Valine, leucine and isoleucine degradation SBML MML
mst00281 Geraniol degradation SBML MML
mst00290 Valine, leucine and isoleucine biosynthesis SBML MML
mst00300 Lysine biosynthesis SBML MML
mst00330 Arginine and proline metabolism SBML MML
mst00340 Histidine metabolism SBML MML
mst00350 Tyrosine metabolism SBML MML
mst00360 Phenylalanine metabolism SBML MML
mst00362 (Undocumented) SBML MML
mst00363 Bisphenol A degradation SBML MML
mst00380 Tryptophan metabolism SBML MML
mst00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mst00401 Novobiocin biosynthesis SBML MML
mst00450 Selenoamino acid metabolism SBML MML
mst00500 Starch and sucrose metabolism SBML MML
mst00510 (Undocumented) SBML MML
mst00520 Amino sugar and nucleotide sugar metabolism SBML MML
mst00521 Streptomycin biosynthesis SBML MML
mst00523 Polyketide sugar unit biosynthesis SBML MML
mst00530 (Undocumented) SBML MML
mst00550 Peptidoglycan biosynthesis SBML MML
mst00562 Inositol phosphate metabolism SBML MML
mst00564 Glycerophospholipid metabolism SBML MML
mst00592 alpha-Linolenic acid metabolism SBML MML
mst00620 Pyruvate metabolism SBML MML
mst00624 1- and 2-Methylnaphthalene degradation SBML MML
mst00625 (Undocumented) SBML MML
mst00626 Naphthalene and anthracene degradation SBML MML
mst00627 1,4-Dichlorobenzene degradation SBML MML
mst00630 Glyoxylate and dicarboxylate metabolism SBML MML
mst00632 (Undocumented) SBML MML
mst00640 Propanoate metabolism SBML MML
mst00650 Butanoate metabolism SBML MML
mst00660 C5-Branched dibasic acid metabolism SBML MML
mst00670 One carbon pool by folate SBML MML
mst00680 Methane metabolism SBML MML
mst00710 (Undocumented) SBML MML
mst00720 (Undocumented) SBML MML
mst00730 Thiamine metabolism SBML MML
mst00740 Riboflavin metabolism SBML MML
mst00750 Vitamin B6 metabolism SBML MML
mst00760 Nicotinate and nicotinamide metabolism SBML MML
mst00770 Pantothenate and CoA biosynthesis SBML MML
mst00790 Folate biosynthesis SBML MML
mst00860 Porphyrin and chlorophyll metabolism SBML MML
mst00900 Terpenoid backbone biosynthesis SBML MML
mst00910 Nitrogen metabolism SBML MML
mst00920 Sulfur metabolism SBML MML
mst00950 (Undocumented) SBML MML
mst00970 Aminoacyl-tRNA biosynthesis SBML MML
mst00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.