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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mse: Metallosphaera sedula

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mse00010 Glycolysis / Gluconeogenesis SBML MML
mse00020 Citrate cycle (TCA cycle) SBML MML
mse00030 Pentose phosphate pathway SBML MML
mse00040 Pentose and glucuronate interconversions SBML MML
mse00051 Fructose and mannose metabolism SBML MML
mse00052 Galactose metabolism SBML MML
mse00061 Fatty acid biosynthesis SBML MML
mse00062 Fatty acid elongation in mitochondria SBML MML
mse00071 Fatty acid metabolism SBML MML
mse00100 (Undocumented) SBML MML
mse00120 (Undocumented) SBML MML
mse00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mse00220 (Undocumented) SBML MML
mse00230 Purine metabolism SBML MML
mse00240 Pyrimidine metabolism SBML MML
mse00251 (Undocumented) SBML MML
mse00252 (Undocumented) SBML MML
mse00260 Glycine, serine and threonine metabolism SBML MML
mse00271 (Undocumented) SBML MML
mse00272 (Undocumented) SBML MML
mse00280 Valine, leucine and isoleucine degradation SBML MML
mse00281 Geraniol degradation SBML MML
mse00290 Valine, leucine and isoleucine biosynthesis SBML MML
mse00300 Lysine biosynthesis SBML MML
mse00310 Lysine degradation SBML MML
mse00330 Arginine and proline metabolism SBML MML
mse00340 Histidine metabolism SBML MML
mse00350 Tyrosine metabolism SBML MML
mse00360 Phenylalanine metabolism SBML MML
mse00361 gamma-Hexachlorocyclohexane degradation SBML MML
mse00362 (Undocumented) SBML MML
mse00364 Fluorobenzoate degradation SBML MML
mse00380 Tryptophan metabolism SBML MML
mse00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mse00401 Novobiocin biosynthesis SBML MML
mse00410 beta-Alanine metabolism SBML MML
mse00450 Selenoamino acid metabolism SBML MML
mse00460 (Undocumented) SBML MML
mse00480 Glutathione metabolism SBML MML
mse00500 Starch and sucrose metabolism SBML MML
mse00520 Amino sugar and nucleotide sugar metabolism SBML MML
mse00521 Streptomycin biosynthesis SBML MML
mse00523 Polyketide sugar unit biosynthesis SBML MML
mse00550 Peptidoglycan biosynthesis SBML MML
mse00562 Inositol phosphate metabolism SBML MML
mse00564 Glycerophospholipid metabolism SBML MML
mse00592 alpha-Linolenic acid metabolism SBML MML
mse00620 Pyruvate metabolism SBML MML
mse00622 Toluene and xylene degradation SBML MML
mse00624 1- and 2-Methylnaphthalene degradation SBML MML
mse00627 1,4-Dichlorobenzene degradation SBML MML
mse00630 Glyoxylate and dicarboxylate metabolism SBML MML
mse00632 (Undocumented) SBML MML
mse00640 Propanoate metabolism SBML MML
mse00641 3-Chloroacrylic acid degradation SBML MML
mse00643 Styrene degradation SBML MML
mse00650 Butanoate metabolism SBML MML
mse00660 C5-Branched dibasic acid metabolism SBML MML
mse00670 One carbon pool by folate SBML MML
mse00680 Methane metabolism SBML MML
mse00710 (Undocumented) SBML MML
mse00720 (Undocumented) SBML MML
mse00730 Thiamine metabolism SBML MML
mse00740 Riboflavin metabolism SBML MML
mse00750 Vitamin B6 metabolism SBML MML
mse00760 Nicotinate and nicotinamide metabolism SBML MML
mse00770 Pantothenate and CoA biosynthesis SBML MML
mse00780 Biotin metabolism SBML MML
mse00790 Folate biosynthesis SBML MML
mse00860 Porphyrin and chlorophyll metabolism SBML MML
mse00900 Terpenoid backbone biosynthesis SBML MML
mse00903 (Undocumented) SBML MML
mse00906 Carotenoid biosynthesis SBML MML
mse00910 Nitrogen metabolism SBML MML
mse00920 Sulfur metabolism SBML MML
mse00930 Caprolactam degradation SBML MML
mse00960 (Undocumented) SBML MML
mse00970 Aminoacyl-tRNA biosynthesis SBML MML
mse00982 (Undocumented) SBML MML
mse00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.