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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mmz: Methanococcus maripaludis C7

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mmz00010 Glycolysis / Gluconeogenesis SBML MML
mmz00020 Citrate cycle (TCA cycle) SBML MML
mmz00030 Pentose phosphate pathway SBML MML
mmz00040 Pentose and glucuronate interconversions SBML MML
mmz00051 Fructose and mannose metabolism SBML MML
mmz00052 Galactose metabolism SBML MML
mmz00071 Fatty acid metabolism SBML MML
mmz00100 (Undocumented) SBML MML
mmz00120 (Undocumented) SBML MML
mmz00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mmz00220 (Undocumented) SBML MML
mmz00230 Purine metabolism SBML MML
mmz00240 Pyrimidine metabolism SBML MML
mmz00251 (Undocumented) SBML MML
mmz00252 (Undocumented) SBML MML
mmz00260 Glycine, serine and threonine metabolism SBML MML
mmz00271 (Undocumented) SBML MML
mmz00272 (Undocumented) SBML MML
mmz00280 Valine, leucine and isoleucine degradation SBML MML
mmz00281 Geraniol degradation SBML MML
mmz00290 Valine, leucine and isoleucine biosynthesis SBML MML
mmz00300 Lysine biosynthesis SBML MML
mmz00330 Arginine and proline metabolism SBML MML
mmz00340 Histidine metabolism SBML MML
mmz00350 Tyrosine metabolism SBML MML
mmz00360 Phenylalanine metabolism SBML MML
mmz00362 (Undocumented) SBML MML
mmz00380 Tryptophan metabolism SBML MML
mmz00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mmz00401 Novobiocin biosynthesis SBML MML
mmz00450 Selenoamino acid metabolism SBML MML
mmz00500 Starch and sucrose metabolism SBML MML
mmz00510 (Undocumented) SBML MML
mmz00520 Amino sugar and nucleotide sugar metabolism SBML MML
mmz00530 (Undocumented) SBML MML
mmz00550 Peptidoglycan biosynthesis SBML MML
mmz00564 Glycerophospholipid metabolism SBML MML
mmz00592 alpha-Linolenic acid metabolism SBML MML
mmz00620 Pyruvate metabolism SBML MML
mmz00624 1- and 2-Methylnaphthalene degradation SBML MML
mmz00625 (Undocumented) SBML MML
mmz00630 Glyoxylate and dicarboxylate metabolism SBML MML
mmz00632 (Undocumented) SBML MML
mmz00640 Propanoate metabolism SBML MML
mmz00642 Ethylbenzene degradation SBML MML
mmz00650 Butanoate metabolism SBML MML
mmz00660 C5-Branched dibasic acid metabolism SBML MML
mmz00670 One carbon pool by folate SBML MML
mmz00680 Methane metabolism SBML MML
mmz00710 (Undocumented) SBML MML
mmz00720 (Undocumented) SBML MML
mmz00730 Thiamine metabolism SBML MML
mmz00750 Vitamin B6 metabolism SBML MML
mmz00760 Nicotinate and nicotinamide metabolism SBML MML
mmz00770 Pantothenate and CoA biosynthesis SBML MML
mmz00780 Biotin metabolism SBML MML
mmz00790 Folate biosynthesis SBML MML
mmz00860 Porphyrin and chlorophyll metabolism SBML MML
mmz00900 Terpenoid backbone biosynthesis SBML MML
mmz00903 (Undocumented) SBML MML
mmz00910 Nitrogen metabolism SBML MML
mmz00950 (Undocumented) SBML MML
mmz00960 (Undocumented) SBML MML
mmz00970 Aminoacyl-tRNA biosynthesis SBML MML
mmz00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.