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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mms: Minibacterium massiliensis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mms00010 Glycolysis / Gluconeogenesis SBML MML
mms00020 Citrate cycle (TCA cycle) SBML MML
mms00030 Pentose phosphate pathway SBML MML
mms00031 (Undocumented) SBML MML
mms00040 Pentose and glucuronate interconversions SBML MML
mms00051 Fructose and mannose metabolism SBML MML
mms00052 Galactose metabolism SBML MML
mms00061 Fatty acid biosynthesis SBML MML
mms00062 Fatty acid elongation in mitochondria SBML MML
mms00071 Fatty acid metabolism SBML MML
mms00072 Synthesis and degradation of ketone bodies SBML MML
mms00100 (Undocumented) SBML MML
mms00120 (Undocumented) SBML MML
mms00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mms00150 Androgen and estrogen metabolism SBML MML
mms00220 (Undocumented) SBML MML
mms00230 Purine metabolism SBML MML
mms00240 Pyrimidine metabolism SBML MML
mms00251 (Undocumented) SBML MML
mms00252 (Undocumented) SBML MML
mms00260 Glycine, serine and threonine metabolism SBML MML
mms00271 (Undocumented) SBML MML
mms00272 (Undocumented) SBML MML
mms00280 Valine, leucine and isoleucine degradation SBML MML
mms00281 Geraniol degradation SBML MML
mms00290 Valine, leucine and isoleucine biosynthesis SBML MML
mms00300 Lysine biosynthesis SBML MML
mms00310 Lysine degradation SBML MML
mms00330 Arginine and proline metabolism SBML MML
mms00340 Histidine metabolism SBML MML
mms00350 Tyrosine metabolism SBML MML
mms00360 Phenylalanine metabolism SBML MML
mms00361 gamma-Hexachlorocyclohexane degradation SBML MML
mms00362 (Undocumented) SBML MML
mms00363 Bisphenol A degradation SBML MML
mms00364 Fluorobenzoate degradation SBML MML
mms00380 Tryptophan metabolism SBML MML
mms00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mms00401 Novobiocin biosynthesis SBML MML
mms00410 beta-Alanine metabolism SBML MML
mms00430 Taurine and hypotaurine metabolism SBML MML
mms00450 Selenoamino acid metabolism SBML MML
mms00460 (Undocumented) SBML MML
mms00471 D-Glutamine and D-glutamate metabolism SBML MML
mms00472 D-Arginine and D-ornithine metabolism SBML MML
mms00473 D-Alanine metabolism SBML MML
mms00480 Glutathione metabolism SBML MML
mms00500 Starch and sucrose metabolism SBML MML
mms00520 Amino sugar and nucleotide sugar metabolism SBML MML
mms00521 Streptomycin biosynthesis SBML MML
mms00523 Polyketide sugar unit biosynthesis SBML MML
mms00530 (Undocumented) SBML MML
mms00540 Lipopolysaccharide biosynthesis SBML MML
mms00550 Peptidoglycan biosynthesis SBML MML
mms00561 Glycerolipid metabolism SBML MML
mms00562 Inositol phosphate metabolism SBML MML
mms00564 Glycerophospholipid metabolism SBML MML
mms00590 Arachidonic acid metabolism SBML MML
mms00620 Pyruvate metabolism SBML MML
mms00622 Toluene and xylene degradation SBML MML
mms00623 2,4-Dichlorobenzoate degradation SBML MML
mms00624 1- and 2-Methylnaphthalene degradation SBML MML
mms00626 Naphthalene and anthracene degradation SBML MML
mms00627 1,4-Dichlorobenzene degradation SBML MML
mms00630 Glyoxylate and dicarboxylate metabolism SBML MML
mms00631 1,2-Dichloroethane degradation SBML MML
mms00632 (Undocumented) SBML MML
mms00640 Propanoate metabolism SBML MML
mms00643 Styrene degradation SBML MML
mms00650 Butanoate metabolism SBML MML
mms00660 C5-Branched dibasic acid metabolism SBML MML
mms00670 One carbon pool by folate SBML MML
mms00680 Methane metabolism SBML MML
mms00710 (Undocumented) SBML MML
mms00720 (Undocumented) SBML MML
mms00730 Thiamine metabolism SBML MML
mms00740 Riboflavin metabolism SBML MML
mms00750 Vitamin B6 metabolism SBML MML
mms00760 Nicotinate and nicotinamide metabolism SBML MML
mms00770 Pantothenate and CoA biosynthesis SBML MML
mms00780 Biotin metabolism SBML MML
mms00785 Lipoic acid metabolism SBML MML
mms00790 Folate biosynthesis SBML MML
mms00791 Atrazine degradation SBML MML
mms00860 Porphyrin and chlorophyll metabolism SBML MML
mms00900 Terpenoid backbone biosynthesis SBML MML
mms00903 (Undocumented) SBML MML
mms00910 Nitrogen metabolism SBML MML
mms00920 Sulfur metabolism SBML MML
mms00930 Caprolactam degradation SBML MML
mms00940 (Undocumented) SBML MML
mms00950 (Undocumented) SBML MML
mms00960 (Undocumented) SBML MML
mms00970 Aminoacyl-tRNA biosynthesis SBML MML
mms00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mms00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.