This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mmp: Methanococcus maripaludis S2

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mmp00010 Glycolysis / Gluconeogenesis SBML MML
mmp00020 Citrate cycle (TCA cycle) SBML MML
mmp00030 Pentose phosphate pathway SBML MML
mmp00040 Pentose and glucuronate interconversions SBML MML
mmp00051 Fructose and mannose metabolism SBML MML
mmp00052 Galactose metabolism SBML MML
mmp00071 Fatty acid metabolism SBML MML
mmp00100 (Undocumented) SBML MML
mmp00120 (Undocumented) SBML MML
mmp00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mmp00220 (Undocumented) SBML MML
mmp00230 Purine metabolism SBML MML
mmp00240 Pyrimidine metabolism SBML MML
mmp00251 (Undocumented) SBML MML
mmp00252 (Undocumented) SBML MML
mmp00260 Glycine, serine and threonine metabolism SBML MML
mmp00271 (Undocumented) SBML MML
mmp00272 (Undocumented) SBML MML
mmp00280 Valine, leucine and isoleucine degradation SBML MML
mmp00281 Geraniol degradation SBML MML
mmp00290 Valine, leucine and isoleucine biosynthesis SBML MML
mmp00300 Lysine biosynthesis SBML MML
mmp00330 Arginine and proline metabolism SBML MML
mmp00340 Histidine metabolism SBML MML
mmp00350 Tyrosine metabolism SBML MML
mmp00360 Phenylalanine metabolism SBML MML
mmp00362 (Undocumented) SBML MML
mmp00380 Tryptophan metabolism SBML MML
mmp00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mmp00401 Novobiocin biosynthesis SBML MML
mmp00450 Selenoamino acid metabolism SBML MML
mmp00500 Starch and sucrose metabolism SBML MML
mmp00510 (Undocumented) SBML MML
mmp00520 Amino sugar and nucleotide sugar metabolism SBML MML
mmp00530 (Undocumented) SBML MML
mmp00550 Peptidoglycan biosynthesis SBML MML
mmp00564 Glycerophospholipid metabolism SBML MML
mmp00592 alpha-Linolenic acid metabolism SBML MML
mmp00620 Pyruvate metabolism SBML MML
mmp00624 1- and 2-Methylnaphthalene degradation SBML MML
mmp00625 (Undocumented) SBML MML
mmp00630 Glyoxylate and dicarboxylate metabolism SBML MML
mmp00632 (Undocumented) SBML MML
mmp00640 Propanoate metabolism SBML MML
mmp00641 3-Chloroacrylic acid degradation SBML MML
mmp00650 Butanoate metabolism SBML MML
mmp00660 C5-Branched dibasic acid metabolism SBML MML
mmp00670 One carbon pool by folate SBML MML
mmp00680 Methane metabolism SBML MML
mmp00710 (Undocumented) SBML MML
mmp00720 (Undocumented) SBML MML
mmp00730 Thiamine metabolism SBML MML
mmp00750 Vitamin B6 metabolism SBML MML
mmp00760 Nicotinate and nicotinamide metabolism SBML MML
mmp00770 Pantothenate and CoA biosynthesis SBML MML
mmp00780 Biotin metabolism SBML MML
mmp00790 Folate biosynthesis SBML MML
mmp00860 Porphyrin and chlorophyll metabolism SBML MML
mmp00900 Terpenoid backbone biosynthesis SBML MML
mmp00910 Nitrogen metabolism SBML MML
mmp00950 (Undocumented) SBML MML
mmp00970 Aminoacyl-tRNA biosynthesis SBML MML
mmp00982 (Undocumented) SBML MML
mmp00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.