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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mmi: Mycobacterium marinum M

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mmi00010 Glycolysis / Gluconeogenesis SBML MML
mmi00020 Citrate cycle (TCA cycle) SBML MML
mmi00030 Pentose phosphate pathway SBML MML
mmi00031 (Undocumented) SBML MML
mmi00040 Pentose and glucuronate interconversions SBML MML
mmi00051 Fructose and mannose metabolism SBML MML
mmi00052 Galactose metabolism SBML MML
mmi00053 Ascorbate and aldarate metabolism SBML MML
mmi00061 Fatty acid biosynthesis SBML MML
mmi00062 Fatty acid elongation in mitochondria SBML MML
mmi00071 Fatty acid metabolism SBML MML
mmi00072 Synthesis and degradation of ketone bodies SBML MML
mmi00100 (Undocumented) SBML MML
mmi00120 (Undocumented) SBML MML
mmi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mmi00140 (Undocumented) SBML MML
mmi00150 Androgen and estrogen metabolism SBML MML
mmi00220 (Undocumented) SBML MML
mmi00230 Purine metabolism SBML MML
mmi00232 Caffeine metabolism SBML MML
mmi00240 Pyrimidine metabolism SBML MML
mmi00251 (Undocumented) SBML MML
mmi00252 (Undocumented) SBML MML
mmi00260 Glycine, serine and threonine metabolism SBML MML
mmi00271 (Undocumented) SBML MML
mmi00272 (Undocumented) SBML MML
mmi00280 Valine, leucine and isoleucine degradation SBML MML
mmi00281 Geraniol degradation SBML MML
mmi00290 Valine, leucine and isoleucine biosynthesis SBML MML
mmi00300 Lysine biosynthesis SBML MML
mmi00310 Lysine degradation SBML MML
mmi00311 Penicillin and cephalosporin biosynthesis SBML MML
mmi00330 Arginine and proline metabolism SBML MML
mmi00340 Histidine metabolism SBML MML
mmi00350 Tyrosine metabolism SBML MML
mmi00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
mmi00360 Phenylalanine metabolism SBML MML
mmi00361 gamma-Hexachlorocyclohexane degradation SBML MML
mmi00362 (Undocumented) SBML MML
mmi00363 Bisphenol A degradation SBML MML
mmi00364 Fluorobenzoate degradation SBML MML
mmi00380 Tryptophan metabolism SBML MML
mmi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mmi00401 Novobiocin biosynthesis SBML MML
mmi00410 beta-Alanine metabolism SBML MML
mmi00430 Taurine and hypotaurine metabolism SBML MML
mmi00450 Selenoamino acid metabolism SBML MML
mmi00460 (Undocumented) SBML MML
mmi00471 D-Glutamine and D-glutamate metabolism SBML MML
mmi00472 D-Arginine and D-ornithine metabolism SBML MML
mmi00473 D-Alanine metabolism SBML MML
mmi00480 Glutathione metabolism SBML MML
mmi00500 Starch and sucrose metabolism SBML MML
mmi00510 (Undocumented) SBML MML
mmi00520 Amino sugar and nucleotide sugar metabolism SBML MML
mmi00521 Streptomycin biosynthesis SBML MML
mmi00523 Polyketide sugar unit biosynthesis SBML MML
mmi00530 (Undocumented) SBML MML
mmi00550 Peptidoglycan biosynthesis SBML MML
mmi00561 Glycerolipid metabolism SBML MML
mmi00562 Inositol phosphate metabolism SBML MML
mmi00564 Glycerophospholipid metabolism SBML MML
mmi00565 Ether lipid metabolism SBML MML
mmi00590 Arachidonic acid metabolism SBML MML
mmi00591 Linoleic acid metabolism SBML MML
mmi00592 alpha-Linolenic acid metabolism SBML MML
mmi00620 Pyruvate metabolism SBML MML
mmi00621 (Undocumented) SBML MML
mmi00622 Toluene and xylene degradation SBML MML
mmi00624 1- and 2-Methylnaphthalene degradation SBML MML
mmi00625 (Undocumented) SBML MML
mmi00626 Naphthalene and anthracene degradation SBML MML
mmi00627 1,4-Dichlorobenzene degradation SBML MML
mmi00628 Fluorene degradation SBML MML
mmi00629 Carbazole degradation SBML MML
mmi00630 Glyoxylate and dicarboxylate metabolism SBML MML
mmi00631 1,2-Dichloroethane degradation SBML MML
mmi00632 (Undocumented) SBML MML
mmi00640 Propanoate metabolism SBML MML
mmi00641 3-Chloroacrylic acid degradation SBML MML
mmi00642 Ethylbenzene degradation SBML MML
mmi00643 Styrene degradation SBML MML
mmi00650 Butanoate metabolism SBML MML
mmi00660 C5-Branched dibasic acid metabolism SBML MML
mmi00670 One carbon pool by folate SBML MML
mmi00680 Methane metabolism SBML MML
mmi00710 (Undocumented) SBML MML
mmi00720 (Undocumented) SBML MML
mmi00730 Thiamine metabolism SBML MML
mmi00740 Riboflavin metabolism SBML MML
mmi00750 Vitamin B6 metabolism SBML MML
mmi00760 Nicotinate and nicotinamide metabolism SBML MML
mmi00770 Pantothenate and CoA biosynthesis SBML MML
mmi00780 Biotin metabolism SBML MML
mmi00790 Folate biosynthesis SBML MML
mmi00791 Atrazine degradation SBML MML
mmi00860 Porphyrin and chlorophyll metabolism SBML MML
mmi00900 Terpenoid backbone biosynthesis SBML MML
mmi00903 (Undocumented) SBML MML
mmi00906 Carotenoid biosynthesis SBML MML
mmi00910 Nitrogen metabolism SBML MML
mmi00920 Sulfur metabolism SBML MML
mmi00930 Caprolactam degradation SBML MML
mmi00940 (Undocumented) SBML MML
mmi00941 (Undocumented) SBML MML
mmi00950 (Undocumented) SBML MML
mmi00960 (Undocumented) SBML MML
mmi00970 Aminoacyl-tRNA biosynthesis SBML MML
mmi00982 (Undocumented) SBML MML
mmi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.