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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mgi: Mycobacterium gilvum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mgi00010 Glycolysis / Gluconeogenesis SBML MML
mgi00020 Citrate cycle (TCA cycle) SBML MML
mgi00030 Pentose phosphate pathway SBML MML
mgi00031 (Undocumented) SBML MML
mgi00040 Pentose and glucuronate interconversions SBML MML
mgi00051 Fructose and mannose metabolism SBML MML
mgi00052 Galactose metabolism SBML MML
mgi00053 Ascorbate and aldarate metabolism SBML MML
mgi00061 Fatty acid biosynthesis SBML MML
mgi00062 Fatty acid elongation in mitochondria SBML MML
mgi00071 Fatty acid metabolism SBML MML
mgi00072 Synthesis and degradation of ketone bodies SBML MML
mgi00100 (Undocumented) SBML MML
mgi00120 (Undocumented) SBML MML
mgi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mgi00140 (Undocumented) SBML MML
mgi00150 Androgen and estrogen metabolism SBML MML
mgi00220 (Undocumented) SBML MML
mgi00230 Purine metabolism SBML MML
mgi00240 Pyrimidine metabolism SBML MML
mgi00251 (Undocumented) SBML MML
mgi00252 (Undocumented) SBML MML
mgi00260 Glycine, serine and threonine metabolism SBML MML
mgi00271 (Undocumented) SBML MML
mgi00272 (Undocumented) SBML MML
mgi00280 Valine, leucine and isoleucine degradation SBML MML
mgi00281 Geraniol degradation SBML MML
mgi00290 Valine, leucine and isoleucine biosynthesis SBML MML
mgi00300 Lysine biosynthesis SBML MML
mgi00310 Lysine degradation SBML MML
mgi00330 Arginine and proline metabolism SBML MML
mgi00340 Histidine metabolism SBML MML
mgi00350 Tyrosine metabolism SBML MML
mgi00360 Phenylalanine metabolism SBML MML
mgi00361 gamma-Hexachlorocyclohexane degradation SBML MML
mgi00362 (Undocumented) SBML MML
mgi00364 Fluorobenzoate degradation SBML MML
mgi00380 Tryptophan metabolism SBML MML
mgi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mgi00401 Novobiocin biosynthesis SBML MML
mgi00410 beta-Alanine metabolism SBML MML
mgi00430 Taurine and hypotaurine metabolism SBML MML
mgi00450 Selenoamino acid metabolism SBML MML
mgi00460 (Undocumented) SBML MML
mgi00471 D-Glutamine and D-glutamate metabolism SBML MML
mgi00473 D-Alanine metabolism SBML MML
mgi00480 Glutathione metabolism SBML MML
mgi00500 Starch and sucrose metabolism SBML MML
mgi00510 (Undocumented) SBML MML
mgi00520 Amino sugar and nucleotide sugar metabolism SBML MML
mgi00521 Streptomycin biosynthesis SBML MML
mgi00523 Polyketide sugar unit biosynthesis SBML MML
mgi00530 (Undocumented) SBML MML
mgi00550 Peptidoglycan biosynthesis SBML MML
mgi00561 Glycerolipid metabolism SBML MML
mgi00562 Inositol phosphate metabolism SBML MML
mgi00564 Glycerophospholipid metabolism SBML MML
mgi00565 Ether lipid metabolism SBML MML
mgi00590 Arachidonic acid metabolism SBML MML
mgi00592 alpha-Linolenic acid metabolism SBML MML
mgi00620 Pyruvate metabolism SBML MML
mgi00621 (Undocumented) SBML MML
mgi00622 Toluene and xylene degradation SBML MML
mgi00624 1- and 2-Methylnaphthalene degradation SBML MML
mgi00626 Naphthalene and anthracene degradation SBML MML
mgi00627 1,4-Dichlorobenzene degradation SBML MML
mgi00628 Fluorene degradation SBML MML
mgi00629 Carbazole degradation SBML MML
mgi00630 Glyoxylate and dicarboxylate metabolism SBML MML
mgi00631 1,2-Dichloroethane degradation SBML MML
mgi00632 (Undocumented) SBML MML
mgi00640 Propanoate metabolism SBML MML
mgi00641 3-Chloroacrylic acid degradation SBML MML
mgi00642 Ethylbenzene degradation SBML MML
mgi00643 Styrene degradation SBML MML
mgi00650 Butanoate metabolism SBML MML
mgi00660 C5-Branched dibasic acid metabolism SBML MML
mgi00670 One carbon pool by folate SBML MML
mgi00680 Methane metabolism SBML MML
mgi00710 (Undocumented) SBML MML
mgi00720 (Undocumented) SBML MML
mgi00730 Thiamine metabolism SBML MML
mgi00740 Riboflavin metabolism SBML MML
mgi00750 Vitamin B6 metabolism SBML MML
mgi00760 Nicotinate and nicotinamide metabolism SBML MML
mgi00770 Pantothenate and CoA biosynthesis SBML MML
mgi00780 Biotin metabolism SBML MML
mgi00785 Lipoic acid metabolism SBML MML
mgi00790 Folate biosynthesis SBML MML
mgi00860 Porphyrin and chlorophyll metabolism SBML MML
mgi00900 Terpenoid backbone biosynthesis SBML MML
mgi00903 (Undocumented) SBML MML
mgi00906 Carotenoid biosynthesis SBML MML
mgi00910 Nitrogen metabolism SBML MML
mgi00920 Sulfur metabolism SBML MML
mgi00930 Caprolactam degradation SBML MML
mgi00941 (Undocumented) SBML MML
mgi00960 (Undocumented) SBML MML
mgi00970 Aminoacyl-tRNA biosynthesis SBML MML
mgi00982 (Undocumented) SBML MML
mgi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.