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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mbn: Candidatus Methanoregula boonei

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mbn00010 Glycolysis / Gluconeogenesis SBML MML
mbn00020 Citrate cycle (TCA cycle) SBML MML
mbn00030 Pentose phosphate pathway SBML MML
mbn00040 Pentose and glucuronate interconversions SBML MML
mbn00051 Fructose and mannose metabolism SBML MML
mbn00052 Galactose metabolism SBML MML
mbn00061 Fatty acid biosynthesis SBML MML
mbn00071 Fatty acid metabolism SBML MML
mbn00100 (Undocumented) SBML MML
mbn00120 (Undocumented) SBML MML
mbn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mbn00220 (Undocumented) SBML MML
mbn00230 Purine metabolism SBML MML
mbn00240 Pyrimidine metabolism SBML MML
mbn00251 (Undocumented) SBML MML
mbn00252 (Undocumented) SBML MML
mbn00260 Glycine, serine and threonine metabolism SBML MML
mbn00271 (Undocumented) SBML MML
mbn00272 (Undocumented) SBML MML
mbn00280 Valine, leucine and isoleucine degradation SBML MML
mbn00281 Geraniol degradation SBML MML
mbn00290 Valine, leucine and isoleucine biosynthesis SBML MML
mbn00300 Lysine biosynthesis SBML MML
mbn00330 Arginine and proline metabolism SBML MML
mbn00340 Histidine metabolism SBML MML
mbn00350 Tyrosine metabolism SBML MML
mbn00360 Phenylalanine metabolism SBML MML
mbn00362 (Undocumented) SBML MML
mbn00380 Tryptophan metabolism SBML MML
mbn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mbn00401 Novobiocin biosynthesis SBML MML
mbn00440 Phosphonate and phosphinate metabolism SBML MML
mbn00450 Selenoamino acid metabolism SBML MML
mbn00500 Starch and sucrose metabolism SBML MML
mbn00510 (Undocumented) SBML MML
mbn00520 Amino sugar and nucleotide sugar metabolism SBML MML
mbn00521 Streptomycin biosynthesis SBML MML
mbn00523 Polyketide sugar unit biosynthesis SBML MML
mbn00550 Peptidoglycan biosynthesis SBML MML
mbn00562 Inositol phosphate metabolism SBML MML
mbn00564 Glycerophospholipid metabolism SBML MML
mbn00592 alpha-Linolenic acid metabolism SBML MML
mbn00620 Pyruvate metabolism SBML MML
mbn00625 (Undocumented) SBML MML
mbn00630 Glyoxylate and dicarboxylate metabolism SBML MML
mbn00632 (Undocumented) SBML MML
mbn00640 Propanoate metabolism SBML MML
mbn00650 Butanoate metabolism SBML MML
mbn00660 C5-Branched dibasic acid metabolism SBML MML
mbn00670 One carbon pool by folate SBML MML
mbn00680 Methane metabolism SBML MML
mbn00710 (Undocumented) SBML MML
mbn00720 (Undocumented) SBML MML
mbn00730 Thiamine metabolism SBML MML
mbn00740 Riboflavin metabolism SBML MML
mbn00750 Vitamin B6 metabolism SBML MML
mbn00760 Nicotinate and nicotinamide metabolism SBML MML
mbn00770 Pantothenate and CoA biosynthesis SBML MML
mbn00780 Biotin metabolism SBML MML
mbn00790 Folate biosynthesis SBML MML
mbn00860 Porphyrin and chlorophyll metabolism SBML MML
mbn00900 Terpenoid backbone biosynthesis SBML MML
mbn00910 Nitrogen metabolism SBML MML
mbn00920 Sulfur metabolism SBML MML
mbn00950 (Undocumented) SBML MML
mbn00970 Aminoacyl-tRNA biosynthesis SBML MML
mbn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.