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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mbb: Mycobacterium bovis BCG Pasteur 1173P2

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mbb00010 Glycolysis / Gluconeogenesis SBML MML
mbb00020 Citrate cycle (TCA cycle) SBML MML
mbb00030 Pentose phosphate pathway SBML MML
mbb00031 (Undocumented) SBML MML
mbb00040 Pentose and glucuronate interconversions SBML MML
mbb00051 Fructose and mannose metabolism SBML MML
mbb00052 Galactose metabolism SBML MML
mbb00053 Ascorbate and aldarate metabolism SBML MML
mbb00061 Fatty acid biosynthesis SBML MML
mbb00062 Fatty acid elongation in mitochondria SBML MML
mbb00071 Fatty acid metabolism SBML MML
mbb00072 Synthesis and degradation of ketone bodies SBML MML
mbb00100 (Undocumented) SBML MML
mbb00120 (Undocumented) SBML MML
mbb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mbb00140 (Undocumented) SBML MML
mbb00150 Androgen and estrogen metabolism SBML MML
mbb00220 (Undocumented) SBML MML
mbb00230 Purine metabolism SBML MML
mbb00240 Pyrimidine metabolism SBML MML
mbb00251 (Undocumented) SBML MML
mbb00252 (Undocumented) SBML MML
mbb00260 Glycine, serine and threonine metabolism SBML MML
mbb00271 (Undocumented) SBML MML
mbb00272 (Undocumented) SBML MML
mbb00280 Valine, leucine and isoleucine degradation SBML MML
mbb00281 Geraniol degradation SBML MML
mbb00290 Valine, leucine and isoleucine biosynthesis SBML MML
mbb00300 Lysine biosynthesis SBML MML
mbb00310 Lysine degradation SBML MML
mbb00311 Penicillin and cephalosporin biosynthesis SBML MML
mbb00330 Arginine and proline metabolism SBML MML
mbb00340 Histidine metabolism SBML MML
mbb00350 Tyrosine metabolism SBML MML
mbb00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
mbb00360 Phenylalanine metabolism SBML MML
mbb00361 gamma-Hexachlorocyclohexane degradation SBML MML
mbb00362 (Undocumented) SBML MML
mbb00363 Bisphenol A degradation SBML MML
mbb00364 Fluorobenzoate degradation SBML MML
mbb00380 Tryptophan metabolism SBML MML
mbb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mbb00401 Novobiocin biosynthesis SBML MML
mbb00410 beta-Alanine metabolism SBML MML
mbb00430 Taurine and hypotaurine metabolism SBML MML
mbb00450 Selenoamino acid metabolism SBML MML
mbb00460 (Undocumented) SBML MML
mbb00471 D-Glutamine and D-glutamate metabolism SBML MML
mbb00472 D-Arginine and D-ornithine metabolism SBML MML
mbb00473 D-Alanine metabolism SBML MML
mbb00480 Glutathione metabolism SBML MML
mbb00500 Starch and sucrose metabolism SBML MML
mbb00510 (Undocumented) SBML MML
mbb00520 Amino sugar and nucleotide sugar metabolism SBML MML
mbb00521 Streptomycin biosynthesis SBML MML
mbb00523 Polyketide sugar unit biosynthesis SBML MML
mbb00530 (Undocumented) SBML MML
mbb00540 Lipopolysaccharide biosynthesis SBML MML
mbb00550 Peptidoglycan biosynthesis SBML MML
mbb00561 Glycerolipid metabolism SBML MML
mbb00562 Inositol phosphate metabolism SBML MML
mbb00564 Glycerophospholipid metabolism SBML MML
mbb00565 Ether lipid metabolism SBML MML
mbb00591 Linoleic acid metabolism SBML MML
mbb00592 alpha-Linolenic acid metabolism SBML MML
mbb00620 Pyruvate metabolism SBML MML
mbb00621 (Undocumented) SBML MML
mbb00622 Toluene and xylene degradation SBML MML
mbb00624 1- and 2-Methylnaphthalene degradation SBML MML
mbb00626 Naphthalene and anthracene degradation SBML MML
mbb00627 1,4-Dichlorobenzene degradation SBML MML
mbb00628 Fluorene degradation SBML MML
mbb00629 Carbazole degradation SBML MML
mbb00630 Glyoxylate and dicarboxylate metabolism SBML MML
mbb00631 1,2-Dichloroethane degradation SBML MML
mbb00632 (Undocumented) SBML MML
mbb00640 Propanoate metabolism SBML MML
mbb00641 3-Chloroacrylic acid degradation SBML MML
mbb00642 Ethylbenzene degradation SBML MML
mbb00643 Styrene degradation SBML MML
mbb00650 Butanoate metabolism SBML MML
mbb00660 C5-Branched dibasic acid metabolism SBML MML
mbb00670 One carbon pool by folate SBML MML
mbb00680 Methane metabolism SBML MML
mbb00710 (Undocumented) SBML MML
mbb00720 (Undocumented) SBML MML
mbb00730 Thiamine metabolism SBML MML
mbb00740 Riboflavin metabolism SBML MML
mbb00750 Vitamin B6 metabolism SBML MML
mbb00760 Nicotinate and nicotinamide metabolism SBML MML
mbb00770 Pantothenate and CoA biosynthesis SBML MML
mbb00780 Biotin metabolism SBML MML
mbb00785 Lipoic acid metabolism SBML MML
mbb00790 Folate biosynthesis SBML MML
mbb00791 Atrazine degradation SBML MML
mbb00860 Porphyrin and chlorophyll metabolism SBML MML
mbb00900 Terpenoid backbone biosynthesis SBML MML
mbb00903 (Undocumented) SBML MML
mbb00910 Nitrogen metabolism SBML MML
mbb00920 Sulfur metabolism SBML MML
mbb00930 Caprolactam degradation SBML MML
mbb00940 (Undocumented) SBML MML
mbb00941 (Undocumented) SBML MML
mbb00960 (Undocumented) SBML MML
mbb00970 Aminoacyl-tRNA biosynthesis SBML MML
mbb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mbb00982 (Undocumented) SBML MML
mbb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.