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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mav: Mycobacterium avium 104

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mav00010 Glycolysis / Gluconeogenesis SBML MML
mav00020 Citrate cycle (TCA cycle) SBML MML
mav00030 Pentose phosphate pathway SBML MML
mav00031 (Undocumented) SBML MML
mav00040 Pentose and glucuronate interconversions SBML MML
mav00051 Fructose and mannose metabolism SBML MML
mav00052 Galactose metabolism SBML MML
mav00053 Ascorbate and aldarate metabolism SBML MML
mav00061 Fatty acid biosynthesis SBML MML
mav00062 Fatty acid elongation in mitochondria SBML MML
mav00071 Fatty acid metabolism SBML MML
mav00072 Synthesis and degradation of ketone bodies SBML MML
mav00100 (Undocumented) SBML MML
mav00120 (Undocumented) SBML MML
mav00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mav00140 (Undocumented) SBML MML
mav00150 Androgen and estrogen metabolism SBML MML
mav00220 (Undocumented) SBML MML
mav00230 Purine metabolism SBML MML
mav00240 Pyrimidine metabolism SBML MML
mav00251 (Undocumented) SBML MML
mav00252 (Undocumented) SBML MML
mav00260 Glycine, serine and threonine metabolism SBML MML
mav00271 (Undocumented) SBML MML
mav00272 (Undocumented) SBML MML
mav00280 Valine, leucine and isoleucine degradation SBML MML
mav00281 Geraniol degradation SBML MML
mav00290 Valine, leucine and isoleucine biosynthesis SBML MML
mav00300 Lysine biosynthesis SBML MML
mav00310 Lysine degradation SBML MML
mav00311 Penicillin and cephalosporin biosynthesis SBML MML
mav00330 Arginine and proline metabolism SBML MML
mav00340 Histidine metabolism SBML MML
mav00350 Tyrosine metabolism SBML MML
mav00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
mav00360 Phenylalanine metabolism SBML MML
mav00361 gamma-Hexachlorocyclohexane degradation SBML MML
mav00362 (Undocumented) SBML MML
mav00363 Bisphenol A degradation SBML MML
mav00364 Fluorobenzoate degradation SBML MML
mav00380 Tryptophan metabolism SBML MML
mav00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mav00401 Novobiocin biosynthesis SBML MML
mav00410 beta-Alanine metabolism SBML MML
mav00430 Taurine and hypotaurine metabolism SBML MML
mav00450 Selenoamino acid metabolism SBML MML
mav00460 (Undocumented) SBML MML
mav00471 D-Glutamine and D-glutamate metabolism SBML MML
mav00472 D-Arginine and D-ornithine metabolism SBML MML
mav00473 D-Alanine metabolism SBML MML
mav00480 Glutathione metabolism SBML MML
mav00500 Starch and sucrose metabolism SBML MML
mav00510 (Undocumented) SBML MML
mav00520 Amino sugar and nucleotide sugar metabolism SBML MML
mav00521 Streptomycin biosynthesis SBML MML
mav00523 Polyketide sugar unit biosynthesis SBML MML
mav00530 (Undocumented) SBML MML
mav00540 Lipopolysaccharide biosynthesis SBML MML
mav00550 Peptidoglycan biosynthesis SBML MML
mav00561 Glycerolipid metabolism SBML MML
mav00562 Inositol phosphate metabolism SBML MML
mav00564 Glycerophospholipid metabolism SBML MML
mav00565 Ether lipid metabolism SBML MML
mav00590 Arachidonic acid metabolism SBML MML
mav00591 Linoleic acid metabolism SBML MML
mav00592 alpha-Linolenic acid metabolism SBML MML
mav00620 Pyruvate metabolism SBML MML
mav00621 (Undocumented) SBML MML
mav00622 Toluene and xylene degradation SBML MML
mav00623 2,4-Dichlorobenzoate degradation SBML MML
mav00624 1- and 2-Methylnaphthalene degradation SBML MML
mav00625 (Undocumented) SBML MML
mav00626 Naphthalene and anthracene degradation SBML MML
mav00627 1,4-Dichlorobenzene degradation SBML MML
mav00628 Fluorene degradation SBML MML
mav00629 Carbazole degradation SBML MML
mav00630 Glyoxylate and dicarboxylate metabolism SBML MML
mav00631 1,2-Dichloroethane degradation SBML MML
mav00632 (Undocumented) SBML MML
mav00640 Propanoate metabolism SBML MML
mav00641 3-Chloroacrylic acid degradation SBML MML
mav00642 Ethylbenzene degradation SBML MML
mav00643 Styrene degradation SBML MML
mav00650 Butanoate metabolism SBML MML
mav00660 C5-Branched dibasic acid metabolism SBML MML
mav00670 One carbon pool by folate SBML MML
mav00680 Methane metabolism SBML MML
mav00710 (Undocumented) SBML MML
mav00720 (Undocumented) SBML MML
mav00730 Thiamine metabolism SBML MML
mav00740 Riboflavin metabolism SBML MML
mav00750 Vitamin B6 metabolism SBML MML
mav00760 Nicotinate and nicotinamide metabolism SBML MML
mav00770 Pantothenate and CoA biosynthesis SBML MML
mav00780 Biotin metabolism SBML MML
mav00785 Lipoic acid metabolism SBML MML
mav00790 Folate biosynthesis SBML MML
mav00791 Atrazine degradation SBML MML
mav00860 Porphyrin and chlorophyll metabolism SBML MML
mav00900 Terpenoid backbone biosynthesis SBML MML
mav00903 (Undocumented) SBML MML
mav00906 Carotenoid biosynthesis SBML MML
mav00910 Nitrogen metabolism SBML MML
mav00920 Sulfur metabolism SBML MML
mav00930 Caprolactam degradation SBML MML
mav00940 (Undocumented) SBML MML
mav00941 (Undocumented) SBML MML
mav00950 (Undocumented) SBML MML
mav00960 (Undocumented) SBML MML
mav00970 Aminoacyl-tRNA biosynthesis SBML MML
mav00982 (Undocumented) SBML MML
mav00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.