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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mar: Microcystis aeruginosa

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mar00010 Glycolysis / Gluconeogenesis SBML MML
mar00020 Citrate cycle (TCA cycle) SBML MML
mar00030 Pentose phosphate pathway SBML MML
mar00031 (Undocumented) SBML MML
mar00040 Pentose and glucuronate interconversions SBML MML
mar00051 Fructose and mannose metabolism SBML MML
mar00052 Galactose metabolism SBML MML
mar00053 Ascorbate and aldarate metabolism SBML MML
mar00061 Fatty acid biosynthesis SBML MML
mar00071 Fatty acid metabolism SBML MML
mar00100 (Undocumented) SBML MML
mar00120 (Undocumented) SBML MML
mar00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mar00150 Androgen and estrogen metabolism SBML MML
mar00220 (Undocumented) SBML MML
mar00230 Purine metabolism SBML MML
mar00240 Pyrimidine metabolism SBML MML
mar00251 (Undocumented) SBML MML
mar00252 (Undocumented) SBML MML
mar00260 Glycine, serine and threonine metabolism SBML MML
mar00271 (Undocumented) SBML MML
mar00272 (Undocumented) SBML MML
mar00280 Valine, leucine and isoleucine degradation SBML MML
mar00290 Valine, leucine and isoleucine biosynthesis SBML MML
mar00300 Lysine biosynthesis SBML MML
mar00310 Lysine degradation SBML MML
mar00311 Penicillin and cephalosporin biosynthesis SBML MML
mar00330 Arginine and proline metabolism SBML MML
mar00340 Histidine metabolism SBML MML
mar00350 Tyrosine metabolism SBML MML
mar00360 Phenylalanine metabolism SBML MML
mar00361 gamma-Hexachlorocyclohexane degradation SBML MML
mar00362 (Undocumented) SBML MML
mar00364 Fluorobenzoate degradation SBML MML
mar00380 Tryptophan metabolism SBML MML
mar00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mar00401 Novobiocin biosynthesis SBML MML
mar00410 beta-Alanine metabolism SBML MML
mar00430 Taurine and hypotaurine metabolism SBML MML
mar00450 Selenoamino acid metabolism SBML MML
mar00460 (Undocumented) SBML MML
mar00471 D-Glutamine and D-glutamate metabolism SBML MML
mar00473 D-Alanine metabolism SBML MML
mar00480 Glutathione metabolism SBML MML
mar00500 Starch and sucrose metabolism SBML MML
mar00520 Amino sugar and nucleotide sugar metabolism SBML MML
mar00521 Streptomycin biosynthesis SBML MML
mar00523 Polyketide sugar unit biosynthesis SBML MML
mar00530 (Undocumented) SBML MML
mar00540 Lipopolysaccharide biosynthesis SBML MML
mar00550 Peptidoglycan biosynthesis SBML MML
mar00561 Glycerolipid metabolism SBML MML
mar00562 Inositol phosphate metabolism SBML MML
mar00564 Glycerophospholipid metabolism SBML MML
mar00620 Pyruvate metabolism SBML MML
mar00624 1- and 2-Methylnaphthalene degradation SBML MML
mar00626 Naphthalene and anthracene degradation SBML MML
mar00627 1,4-Dichlorobenzene degradation SBML MML
mar00630 Glyoxylate and dicarboxylate metabolism SBML MML
mar00631 1,2-Dichloroethane degradation SBML MML
mar00632 (Undocumented) SBML MML
mar00640 Propanoate metabolism SBML MML
mar00641 3-Chloroacrylic acid degradation SBML MML
mar00643 Styrene degradation SBML MML
mar00650 Butanoate metabolism SBML MML
mar00660 C5-Branched dibasic acid metabolism SBML MML
mar00670 One carbon pool by folate SBML MML
mar00680 Methane metabolism SBML MML
mar00710 (Undocumented) SBML MML
mar00720 (Undocumented) SBML MML
mar00730 Thiamine metabolism SBML MML
mar00740 Riboflavin metabolism SBML MML
mar00750 Vitamin B6 metabolism SBML MML
mar00760 Nicotinate and nicotinamide metabolism SBML MML
mar00770 Pantothenate and CoA biosynthesis SBML MML
mar00780 Biotin metabolism SBML MML
mar00790 Folate biosynthesis SBML MML
mar00860 Porphyrin and chlorophyll metabolism SBML MML
mar00900 Terpenoid backbone biosynthesis SBML MML
mar00906 Carotenoid biosynthesis SBML MML
mar00910 Nitrogen metabolism SBML MML
mar00920 Sulfur metabolism SBML MML
mar00940 (Undocumented) SBML MML
mar00970 Aminoacyl-tRNA biosynthesis SBML MML
mar00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mar00982 (Undocumented) SBML MML
mar00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.