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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism maq: Marinobacter aquaeolei

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
maq00010 Glycolysis / Gluconeogenesis SBML MML
maq00020 Citrate cycle (TCA cycle) SBML MML
maq00030 Pentose phosphate pathway SBML MML
maq00031 (Undocumented) SBML MML
maq00040 Pentose and glucuronate interconversions SBML MML
maq00051 Fructose and mannose metabolism SBML MML
maq00052 Galactose metabolism SBML MML
maq00053 Ascorbate and aldarate metabolism SBML MML
maq00061 Fatty acid biosynthesis SBML MML
maq00062 Fatty acid elongation in mitochondria SBML MML
maq00071 Fatty acid metabolism SBML MML
maq00072 Synthesis and degradation of ketone bodies SBML MML
maq00100 (Undocumented) SBML MML
maq00120 (Undocumented) SBML MML
maq00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
maq00220 (Undocumented) SBML MML
maq00230 Purine metabolism SBML MML
maq00240 Pyrimidine metabolism SBML MML
maq00251 (Undocumented) SBML MML
maq00252 (Undocumented) SBML MML
maq00260 Glycine, serine and threonine metabolism SBML MML
maq00271 (Undocumented) SBML MML
maq00272 (Undocumented) SBML MML
maq00280 Valine, leucine and isoleucine degradation SBML MML
maq00281 Geraniol degradation SBML MML
maq00290 Valine, leucine and isoleucine biosynthesis SBML MML
maq00300 Lysine biosynthesis SBML MML
maq00310 Lysine degradation SBML MML
maq00330 Arginine and proline metabolism SBML MML
maq00340 Histidine metabolism SBML MML
maq00350 Tyrosine metabolism SBML MML
maq00360 Phenylalanine metabolism SBML MML
maq00361 gamma-Hexachlorocyclohexane degradation SBML MML
maq00362 (Undocumented) SBML MML
maq00380 Tryptophan metabolism SBML MML
maq00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
maq00401 Novobiocin biosynthesis SBML MML
maq00410 beta-Alanine metabolism SBML MML
maq00430 Taurine and hypotaurine metabolism SBML MML
maq00450 Selenoamino acid metabolism SBML MML
maq00460 (Undocumented) SBML MML
maq00471 D-Glutamine and D-glutamate metabolism SBML MML
maq00473 D-Alanine metabolism SBML MML
maq00480 Glutathione metabolism SBML MML
maq00500 Starch and sucrose metabolism SBML MML
maq00520 Amino sugar and nucleotide sugar metabolism SBML MML
maq00521 Streptomycin biosynthesis SBML MML
maq00523 Polyketide sugar unit biosynthesis SBML MML
maq00530 (Undocumented) SBML MML
maq00540 Lipopolysaccharide biosynthesis SBML MML
maq00550 Peptidoglycan biosynthesis SBML MML
maq00561 Glycerolipid metabolism SBML MML
maq00562 Inositol phosphate metabolism SBML MML
maq00564 Glycerophospholipid metabolism SBML MML
maq00565 Ether lipid metabolism SBML MML
maq00590 Arachidonic acid metabolism SBML MML
maq00592 alpha-Linolenic acid metabolism SBML MML
maq00620 Pyruvate metabolism SBML MML
maq00624 1- and 2-Methylnaphthalene degradation SBML MML
maq00626 Naphthalene and anthracene degradation SBML MML
maq00630 Glyoxylate and dicarboxylate metabolism SBML MML
maq00631 1,2-Dichloroethane degradation SBML MML
maq00632 (Undocumented) SBML MML
maq00633 Trinitrotoluene degradation SBML MML
maq00640 Propanoate metabolism SBML MML
maq00641 3-Chloroacrylic acid degradation SBML MML
maq00643 Styrene degradation SBML MML
maq00650 Butanoate metabolism SBML MML
maq00660 C5-Branched dibasic acid metabolism SBML MML
maq00670 One carbon pool by folate SBML MML
maq00680 Methane metabolism SBML MML
maq00710 (Undocumented) SBML MML
maq00720 (Undocumented) SBML MML
maq00730 Thiamine metabolism SBML MML
maq00740 Riboflavin metabolism SBML MML
maq00750 Vitamin B6 metabolism SBML MML
maq00760 Nicotinate and nicotinamide metabolism SBML MML
maq00770 Pantothenate and CoA biosynthesis SBML MML
maq00780 Biotin metabolism SBML MML
maq00785 Lipoic acid metabolism SBML MML
maq00790 Folate biosynthesis SBML MML
maq00860 Porphyrin and chlorophyll metabolism SBML MML
maq00900 Terpenoid backbone biosynthesis SBML MML
maq00903 (Undocumented) SBML MML
maq00910 Nitrogen metabolism SBML MML
maq00920 Sulfur metabolism SBML MML
maq00930 Caprolactam degradation SBML MML
maq00940 (Undocumented) SBML MML
maq00960 (Undocumented) SBML MML
maq00970 Aminoacyl-tRNA biosynthesis SBML MML
maq00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
maq00982 (Undocumented) SBML MML
maq00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.