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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lsa: Lactobacillus sakei

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lsa00010 Glycolysis / Gluconeogenesis SBML MML
lsa00020 Citrate cycle (TCA cycle) SBML MML
lsa00030 Pentose phosphate pathway SBML MML
lsa00040 Pentose and glucuronate interconversions SBML MML
lsa00051 Fructose and mannose metabolism SBML MML
lsa00052 Galactose metabolism SBML MML
lsa00061 Fatty acid biosynthesis SBML MML
lsa00071 Fatty acid metabolism SBML MML
lsa00072 Synthesis and degradation of ketone bodies SBML MML
lsa00100 (Undocumented) SBML MML
lsa00120 (Undocumented) SBML MML
lsa00220 (Undocumented) SBML MML
lsa00230 Purine metabolism SBML MML
lsa00240 Pyrimidine metabolism SBML MML
lsa00251 (Undocumented) SBML MML
lsa00252 (Undocumented) SBML MML
lsa00260 Glycine, serine and threonine metabolism SBML MML
lsa00271 (Undocumented) SBML MML
lsa00272 (Undocumented) SBML MML
lsa00280 Valine, leucine and isoleucine degradation SBML MML
lsa00290 Valine, leucine and isoleucine biosynthesis SBML MML
lsa00300 Lysine biosynthesis SBML MML
lsa00310 Lysine degradation SBML MML
lsa00330 Arginine and proline metabolism SBML MML
lsa00340 Histidine metabolism SBML MML
lsa00350 Tyrosine metabolism SBML MML
lsa00360 Phenylalanine metabolism SBML MML
lsa00361 gamma-Hexachlorocyclohexane degradation SBML MML
lsa00362 (Undocumented) SBML MML
lsa00380 Tryptophan metabolism SBML MML
lsa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lsa00430 Taurine and hypotaurine metabolism SBML MML
lsa00440 Phosphonate and phosphinate metabolism SBML MML
lsa00450 Selenoamino acid metabolism SBML MML
lsa00460 (Undocumented) SBML MML
lsa00471 D-Glutamine and D-glutamate metabolism SBML MML
lsa00473 D-Alanine metabolism SBML MML
lsa00480 Glutathione metabolism SBML MML
lsa00500 Starch and sucrose metabolism SBML MML
lsa00520 Amino sugar and nucleotide sugar metabolism SBML MML
lsa00521 Streptomycin biosynthesis SBML MML
lsa00530 (Undocumented) SBML MML
lsa00550 Peptidoglycan biosynthesis SBML MML
lsa00561 Glycerolipid metabolism SBML MML
lsa00562 Inositol phosphate metabolism SBML MML
lsa00564 Glycerophospholipid metabolism SBML MML
lsa00600 Sphingolipid metabolism SBML MML
lsa00620 Pyruvate metabolism SBML MML
lsa00622 Toluene and xylene degradation SBML MML
lsa00624 1- and 2-Methylnaphthalene degradation SBML MML
lsa00626 Naphthalene and anthracene degradation SBML MML
lsa00628 Fluorene degradation SBML MML
lsa00630 Glyoxylate and dicarboxylate metabolism SBML MML
lsa00632 (Undocumented) SBML MML
lsa00640 Propanoate metabolism SBML MML
lsa00641 3-Chloroacrylic acid degradation SBML MML
lsa00650 Butanoate metabolism SBML MML
lsa00660 C5-Branched dibasic acid metabolism SBML MML
lsa00670 One carbon pool by folate SBML MML
lsa00680 Methane metabolism SBML MML
lsa00710 (Undocumented) SBML MML
lsa00730 Thiamine metabolism SBML MML
lsa00740 Riboflavin metabolism SBML MML
lsa00750 Vitamin B6 metabolism SBML MML
lsa00760 Nicotinate and nicotinamide metabolism SBML MML
lsa00770 Pantothenate and CoA biosynthesis SBML MML
lsa00780 Biotin metabolism SBML MML
lsa00785 Lipoic acid metabolism SBML MML
lsa00790 Folate biosynthesis SBML MML
lsa00860 Porphyrin and chlorophyll metabolism SBML MML
lsa00900 Terpenoid backbone biosynthesis SBML MML
lsa00903 (Undocumented) SBML MML
lsa00910 Nitrogen metabolism SBML MML
lsa00940 (Undocumented) SBML MML
lsa00941 (Undocumented) SBML MML
lsa00950 (Undocumented) SBML MML
lsa00960 (Undocumented) SBML MML
lsa00970 Aminoacyl-tRNA biosynthesis SBML MML
lsa00982 (Undocumented) SBML MML
lsa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.