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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lme: Leuconostoc mesenteroides

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lme00010 Glycolysis / Gluconeogenesis SBML MML
lme00020 Citrate cycle (TCA cycle) SBML MML
lme00030 Pentose phosphate pathway SBML MML
lme00040 Pentose and glucuronate interconversions SBML MML
lme00051 Fructose and mannose metabolism SBML MML
lme00052 Galactose metabolism SBML MML
lme00053 Ascorbate and aldarate metabolism SBML MML
lme00061 Fatty acid biosynthesis SBML MML
lme00100 (Undocumented) SBML MML
lme00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
lme00220 (Undocumented) SBML MML
lme00230 Purine metabolism SBML MML
lme00240 Pyrimidine metabolism SBML MML
lme00251 (Undocumented) SBML MML
lme00252 (Undocumented) SBML MML
lme00260 Glycine, serine and threonine metabolism SBML MML
lme00271 (Undocumented) SBML MML
lme00272 (Undocumented) SBML MML
lme00280 Valine, leucine and isoleucine degradation SBML MML
lme00290 Valine, leucine and isoleucine biosynthesis SBML MML
lme00300 Lysine biosynthesis SBML MML
lme00330 Arginine and proline metabolism SBML MML
lme00340 Histidine metabolism SBML MML
lme00350 Tyrosine metabolism SBML MML
lme00360 Phenylalanine metabolism SBML MML
lme00380 Tryptophan metabolism SBML MML
lme00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lme00401 Novobiocin biosynthesis SBML MML
lme00410 beta-Alanine metabolism SBML MML
lme00430 Taurine and hypotaurine metabolism SBML MML
lme00450 Selenoamino acid metabolism SBML MML
lme00460 (Undocumented) SBML MML
lme00471 D-Glutamine and D-glutamate metabolism SBML MML
lme00473 D-Alanine metabolism SBML MML
lme00480 Glutathione metabolism SBML MML
lme00500 Starch and sucrose metabolism SBML MML
lme00520 Amino sugar and nucleotide sugar metabolism SBML MML
lme00521 Streptomycin biosynthesis SBML MML
lme00523 Polyketide sugar unit biosynthesis SBML MML
lme00530 (Undocumented) SBML MML
lme00550 Peptidoglycan biosynthesis SBML MML
lme00561 Glycerolipid metabolism SBML MML
lme00562 Inositol phosphate metabolism SBML MML
lme00564 Glycerophospholipid metabolism SBML MML
lme00590 Arachidonic acid metabolism SBML MML
lme00600 Sphingolipid metabolism SBML MML
lme00620 Pyruvate metabolism SBML MML
lme00624 1- and 2-Methylnaphthalene degradation SBML MML
lme00630 Glyoxylate and dicarboxylate metabolism SBML MML
lme00632 (Undocumented) SBML MML
lme00640 Propanoate metabolism SBML MML
lme00641 3-Chloroacrylic acid degradation SBML MML
lme00650 Butanoate metabolism SBML MML
lme00660 C5-Branched dibasic acid metabolism SBML MML
lme00670 One carbon pool by folate SBML MML
lme00680 Methane metabolism SBML MML
lme00710 (Undocumented) SBML MML
lme00730 Thiamine metabolism SBML MML
lme00740 Riboflavin metabolism SBML MML
lme00750 Vitamin B6 metabolism SBML MML
lme00760 Nicotinate and nicotinamide metabolism SBML MML
lme00770 Pantothenate and CoA biosynthesis SBML MML
lme00780 Biotin metabolism SBML MML
lme00785 Lipoic acid metabolism SBML MML
lme00790 Folate biosynthesis SBML MML
lme00860 Porphyrin and chlorophyll metabolism SBML MML
lme00900 Terpenoid backbone biosynthesis SBML MML
lme00906 Carotenoid biosynthesis SBML MML
lme00910 Nitrogen metabolism SBML MML
lme00920 Sulfur metabolism SBML MML
lme00950 (Undocumented) SBML MML
lme00970 Aminoacyl-tRNA biosynthesis SBML MML
lme00982 (Undocumented) SBML MML
lme00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.