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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lga: Lactobacillus gasseri

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lga00010 Glycolysis / Gluconeogenesis SBML MML
lga00020 Citrate cycle (TCA cycle) SBML MML
lga00030 Pentose phosphate pathway SBML MML
lga00040 Pentose and glucuronate interconversions SBML MML
lga00051 Fructose and mannose metabolism SBML MML
lga00052 Galactose metabolism SBML MML
lga00061 Fatty acid biosynthesis SBML MML
lga00071 Fatty acid metabolism SBML MML
lga00072 Synthesis and degradation of ketone bodies SBML MML
lga00100 (Undocumented) SBML MML
lga00120 (Undocumented) SBML MML
lga00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
lga00220 (Undocumented) SBML MML
lga00230 Purine metabolism SBML MML
lga00240 Pyrimidine metabolism SBML MML
lga00251 (Undocumented) SBML MML
lga00252 (Undocumented) SBML MML
lga00260 Glycine, serine and threonine metabolism SBML MML
lga00271 (Undocumented) SBML MML
lga00272 (Undocumented) SBML MML
lga00280 Valine, leucine and isoleucine degradation SBML MML
lga00290 Valine, leucine and isoleucine biosynthesis SBML MML
lga00300 Lysine biosynthesis SBML MML
lga00310 Lysine degradation SBML MML
lga00330 Arginine and proline metabolism SBML MML
lga00340 Histidine metabolism SBML MML
lga00350 Tyrosine metabolism SBML MML
lga00380 Tryptophan metabolism SBML MML
lga00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lga00430 Taurine and hypotaurine metabolism SBML MML
lga00450 Selenoamino acid metabolism SBML MML
lga00460 (Undocumented) SBML MML
lga00471 D-Glutamine and D-glutamate metabolism SBML MML
lga00473 D-Alanine metabolism SBML MML
lga00480 Glutathione metabolism SBML MML
lga00500 Starch and sucrose metabolism SBML MML
lga00520 Amino sugar and nucleotide sugar metabolism SBML MML
lga00521 Streptomycin biosynthesis SBML MML
lga00523 Polyketide sugar unit biosynthesis SBML MML
lga00530 (Undocumented) SBML MML
lga00550 Peptidoglycan biosynthesis SBML MML
lga00561 Glycerolipid metabolism SBML MML
lga00564 Glycerophospholipid metabolism SBML MML
lga00620 Pyruvate metabolism SBML MML
lga00624 1- and 2-Methylnaphthalene degradation SBML MML
lga00630 Glyoxylate and dicarboxylate metabolism SBML MML
lga00632 (Undocumented) SBML MML
lga00640 Propanoate metabolism SBML MML
lga00641 3-Chloroacrylic acid degradation SBML MML
lga00650 Butanoate metabolism SBML MML
lga00670 One carbon pool by folate SBML MML
lga00680 Methane metabolism SBML MML
lga00710 (Undocumented) SBML MML
lga00720 (Undocumented) SBML MML
lga00730 Thiamine metabolism SBML MML
lga00740 Riboflavin metabolism SBML MML
lga00750 Vitamin B6 metabolism SBML MML
lga00760 Nicotinate and nicotinamide metabolism SBML MML
lga00770 Pantothenate and CoA biosynthesis SBML MML
lga00790 Folate biosynthesis SBML MML
lga00900 Terpenoid backbone biosynthesis SBML MML
lga00910 Nitrogen metabolism SBML MML
lga00960 (Undocumented) SBML MML
lga00970 Aminoacyl-tRNA biosynthesis SBML MML
lga00982 (Undocumented) SBML MML
lga00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.