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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lch: Leptothrix cholodnii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lch00010 Glycolysis / Gluconeogenesis SBML MML
lch00020 Citrate cycle (TCA cycle) SBML MML
lch00030 Pentose phosphate pathway SBML MML
lch00031 (Undocumented) SBML MML
lch00040 Pentose and glucuronate interconversions SBML MML
lch00051 Fructose and mannose metabolism SBML MML
lch00052 Galactose metabolism SBML MML
lch00053 Ascorbate and aldarate metabolism SBML MML
lch00061 Fatty acid biosynthesis SBML MML
lch00062 Fatty acid elongation in mitochondria SBML MML
lch00071 Fatty acid metabolism SBML MML
lch00072 Synthesis and degradation of ketone bodies SBML MML
lch00100 (Undocumented) SBML MML
lch00120 (Undocumented) SBML MML
lch00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
lch00220 (Undocumented) SBML MML
lch00230 Purine metabolism SBML MML
lch00240 Pyrimidine metabolism SBML MML
lch00251 (Undocumented) SBML MML
lch00252 (Undocumented) SBML MML
lch00260 Glycine, serine and threonine metabolism SBML MML
lch00271 (Undocumented) SBML MML
lch00272 (Undocumented) SBML MML
lch00280 Valine, leucine and isoleucine degradation SBML MML
lch00281 Geraniol degradation SBML MML
lch00290 Valine, leucine and isoleucine biosynthesis SBML MML
lch00300 Lysine biosynthesis SBML MML
lch00310 Lysine degradation SBML MML
lch00311 Penicillin and cephalosporin biosynthesis SBML MML
lch00330 Arginine and proline metabolism SBML MML
lch00340 Histidine metabolism SBML MML
lch00350 Tyrosine metabolism SBML MML
lch00360 Phenylalanine metabolism SBML MML
lch00361 gamma-Hexachlorocyclohexane degradation SBML MML
lch00362 (Undocumented) SBML MML
lch00364 Fluorobenzoate degradation SBML MML
lch00380 Tryptophan metabolism SBML MML
lch00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lch00401 Novobiocin biosynthesis SBML MML
lch00410 beta-Alanine metabolism SBML MML
lch00430 Taurine and hypotaurine metabolism SBML MML
lch00450 Selenoamino acid metabolism SBML MML
lch00460 (Undocumented) SBML MML
lch00471 D-Glutamine and D-glutamate metabolism SBML MML
lch00472 D-Arginine and D-ornithine metabolism SBML MML
lch00473 D-Alanine metabolism SBML MML
lch00480 Glutathione metabolism SBML MML
lch00500 Starch and sucrose metabolism SBML MML
lch00520 Amino sugar and nucleotide sugar metabolism SBML MML
lch00521 Streptomycin biosynthesis SBML MML
lch00523 Polyketide sugar unit biosynthesis SBML MML
lch00530 (Undocumented) SBML MML
lch00540 Lipopolysaccharide biosynthesis SBML MML
lch00550 Peptidoglycan biosynthesis SBML MML
lch00561 Glycerolipid metabolism SBML MML
lch00562 Inositol phosphate metabolism SBML MML
lch00564 Glycerophospholipid metabolism SBML MML
lch00590 Arachidonic acid metabolism SBML MML
lch00592 alpha-Linolenic acid metabolism SBML MML
lch00600 Sphingolipid metabolism SBML MML
lch00620 Pyruvate metabolism SBML MML
lch00622 Toluene and xylene degradation SBML MML
lch00623 2,4-Dichlorobenzoate degradation SBML MML
lch00624 1- and 2-Methylnaphthalene degradation SBML MML
lch00625 (Undocumented) SBML MML
lch00626 Naphthalene and anthracene degradation SBML MML
lch00627 1,4-Dichlorobenzene degradation SBML MML
lch00628 Fluorene degradation SBML MML
lch00629 Carbazole degradation SBML MML
lch00630 Glyoxylate and dicarboxylate metabolism SBML MML
lch00631 1,2-Dichloroethane degradation SBML MML
lch00632 (Undocumented) SBML MML
lch00633 Trinitrotoluene degradation SBML MML
lch00640 Propanoate metabolism SBML MML
lch00641 3-Chloroacrylic acid degradation SBML MML
lch00642 Ethylbenzene degradation SBML MML
lch00643 Styrene degradation SBML MML
lch00650 Butanoate metabolism SBML MML
lch00660 C5-Branched dibasic acid metabolism SBML MML
lch00670 One carbon pool by folate SBML MML
lch00680 Methane metabolism SBML MML
lch00710 (Undocumented) SBML MML
lch00720 (Undocumented) SBML MML
lch00730 Thiamine metabolism SBML MML
lch00740 Riboflavin metabolism SBML MML
lch00750 Vitamin B6 metabolism SBML MML
lch00760 Nicotinate and nicotinamide metabolism SBML MML
lch00770 Pantothenate and CoA biosynthesis SBML MML
lch00780 Biotin metabolism SBML MML
lch00790 Folate biosynthesis SBML MML
lch00791 Atrazine degradation SBML MML
lch00860 Porphyrin and chlorophyll metabolism SBML MML
lch00900 Terpenoid backbone biosynthesis SBML MML
lch00903 (Undocumented) SBML MML
lch00910 Nitrogen metabolism SBML MML
lch00920 Sulfur metabolism SBML MML
lch00930 Caprolactam degradation SBML MML
lch00940 (Undocumented) SBML MML
lch00950 (Undocumented) SBML MML
lch00960 (Undocumented) SBML MML
lch00970 Aminoacyl-tRNA biosynthesis SBML MML
lch00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
lch00982 (Undocumented) SBML MML
lch00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.