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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lca: Lactobacillus casei ATCC 334

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lca00010 Glycolysis / Gluconeogenesis SBML MML
lca00020 Citrate cycle (TCA cycle) SBML MML
lca00030 Pentose phosphate pathway SBML MML
lca00040 Pentose and glucuronate interconversions SBML MML
lca00051 Fructose and mannose metabolism SBML MML
lca00052 Galactose metabolism SBML MML
lca00053 Ascorbate and aldarate metabolism SBML MML
lca00061 Fatty acid biosynthesis SBML MML
lca00071 Fatty acid metabolism SBML MML
lca00072 Synthesis and degradation of ketone bodies SBML MML
lca00100 (Undocumented) SBML MML
lca00120 (Undocumented) SBML MML
lca00220 (Undocumented) SBML MML
lca00230 Purine metabolism SBML MML
lca00240 Pyrimidine metabolism SBML MML
lca00251 (Undocumented) SBML MML
lca00252 (Undocumented) SBML MML
lca00260 Glycine, serine and threonine metabolism SBML MML
lca00271 (Undocumented) SBML MML
lca00272 (Undocumented) SBML MML
lca00280 Valine, leucine and isoleucine degradation SBML MML
lca00290 Valine, leucine and isoleucine biosynthesis SBML MML
lca00300 Lysine biosynthesis SBML MML
lca00330 Arginine and proline metabolism SBML MML
lca00340 Histidine metabolism SBML MML
lca00350 Tyrosine metabolism SBML MML
lca00360 Phenylalanine metabolism SBML MML
lca00361 gamma-Hexachlorocyclohexane degradation SBML MML
lca00362 (Undocumented) SBML MML
lca00363 Bisphenol A degradation SBML MML
lca00380 Tryptophan metabolism SBML MML
lca00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lca00401 Novobiocin biosynthesis SBML MML
lca00430 Taurine and hypotaurine metabolism SBML MML
lca00450 Selenoamino acid metabolism SBML MML
lca00460 (Undocumented) SBML MML
lca00471 D-Glutamine and D-glutamate metabolism SBML MML
lca00473 D-Alanine metabolism SBML MML
lca00480 Glutathione metabolism SBML MML
lca00500 Starch and sucrose metabolism SBML MML
lca00510 (Undocumented) SBML MML
lca00520 Amino sugar and nucleotide sugar metabolism SBML MML
lca00521 Streptomycin biosynthesis SBML MML
lca00523 Polyketide sugar unit biosynthesis SBML MML
lca00530 (Undocumented) SBML MML
lca00550 Peptidoglycan biosynthesis SBML MML
lca00561 Glycerolipid metabolism SBML MML
lca00562 Inositol phosphate metabolism SBML MML
lca00564 Glycerophospholipid metabolism SBML MML
lca00590 Arachidonic acid metabolism SBML MML
lca00600 Sphingolipid metabolism SBML MML
lca00620 Pyruvate metabolism SBML MML
lca00624 1- and 2-Methylnaphthalene degradation SBML MML
lca00626 Naphthalene and anthracene degradation SBML MML
lca00630 Glyoxylate and dicarboxylate metabolism SBML MML
lca00632 (Undocumented) SBML MML
lca00640 Propanoate metabolism SBML MML
lca00641 3-Chloroacrylic acid degradation SBML MML
lca00650 Butanoate metabolism SBML MML
lca00660 C5-Branched dibasic acid metabolism SBML MML
lca00670 One carbon pool by folate SBML MML
lca00680 Methane metabolism SBML MML
lca00710 (Undocumented) SBML MML
lca00720 (Undocumented) SBML MML
lca00730 Thiamine metabolism SBML MML
lca00740 Riboflavin metabolism SBML MML
lca00750 Vitamin B6 metabolism SBML MML
lca00760 Nicotinate and nicotinamide metabolism SBML MML
lca00770 Pantothenate and CoA biosynthesis SBML MML
lca00780 Biotin metabolism SBML MML
lca00785 Lipoic acid metabolism SBML MML
lca00790 Folate biosynthesis SBML MML
lca00860 Porphyrin and chlorophyll metabolism SBML MML
lca00900 Terpenoid backbone biosynthesis SBML MML
lca00903 (Undocumented) SBML MML
lca00910 Nitrogen metabolism SBML MML
lca00920 Sulfur metabolism SBML MML
lca00950 (Undocumented) SBML MML
lca00960 (Undocumented) SBML MML
lca00970 Aminoacyl-tRNA biosynthesis SBML MML
lca00982 (Undocumented) SBML MML
lca00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.