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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lbi: Leptospira biflexa serovar Patoc Patoc 1 (Paris)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lbi00010 Glycolysis / Gluconeogenesis SBML MML
lbi00020 Citrate cycle (TCA cycle) SBML MML
lbi00030 Pentose phosphate pathway SBML MML
lbi00040 Pentose and glucuronate interconversions SBML MML
lbi00051 Fructose and mannose metabolism SBML MML
lbi00052 Galactose metabolism SBML MML
lbi00053 Ascorbate and aldarate metabolism SBML MML
lbi00061 Fatty acid biosynthesis SBML MML
lbi00062 Fatty acid elongation in mitochondria SBML MML
lbi00071 Fatty acid metabolism SBML MML
lbi00072 Synthesis and degradation of ketone bodies SBML MML
lbi00100 (Undocumented) SBML MML
lbi00120 (Undocumented) SBML MML
lbi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
lbi00220 (Undocumented) SBML MML
lbi00230 Purine metabolism SBML MML
lbi00240 Pyrimidine metabolism SBML MML
lbi00251 (Undocumented) SBML MML
lbi00252 (Undocumented) SBML MML
lbi00260 Glycine, serine and threonine metabolism SBML MML
lbi00271 (Undocumented) SBML MML
lbi00272 (Undocumented) SBML MML
lbi00280 Valine, leucine and isoleucine degradation SBML MML
lbi00281 Geraniol degradation SBML MML
lbi00290 Valine, leucine and isoleucine biosynthesis SBML MML
lbi00300 Lysine biosynthesis SBML MML
lbi00310 Lysine degradation SBML MML
lbi00311 Penicillin and cephalosporin biosynthesis SBML MML
lbi00330 Arginine and proline metabolism SBML MML
lbi00340 Histidine metabolism SBML MML
lbi00350 Tyrosine metabolism SBML MML
lbi00360 Phenylalanine metabolism SBML MML
lbi00361 gamma-Hexachlorocyclohexane degradation SBML MML
lbi00380 Tryptophan metabolism SBML MML
lbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lbi00401 Novobiocin biosynthesis SBML MML
lbi00410 beta-Alanine metabolism SBML MML
lbi00450 Selenoamino acid metabolism SBML MML
lbi00460 (Undocumented) SBML MML
lbi00471 D-Glutamine and D-glutamate metabolism SBML MML
lbi00473 D-Alanine metabolism SBML MML
lbi00480 Glutathione metabolism SBML MML
lbi00500 Starch and sucrose metabolism SBML MML
lbi00510 (Undocumented) SBML MML
lbi00520 Amino sugar and nucleotide sugar metabolism SBML MML
lbi00521 Streptomycin biosynthesis SBML MML
lbi00523 Polyketide sugar unit biosynthesis SBML MML
lbi00530 (Undocumented) SBML MML
lbi00540 Lipopolysaccharide biosynthesis SBML MML
lbi00550 Peptidoglycan biosynthesis SBML MML
lbi00561 Glycerolipid metabolism SBML MML
lbi00562 Inositol phosphate metabolism SBML MML
lbi00564 Glycerophospholipid metabolism SBML MML
lbi00590 Arachidonic acid metabolism SBML MML
lbi00592 alpha-Linolenic acid metabolism SBML MML
lbi00600 Sphingolipid metabolism SBML MML
lbi00620 Pyruvate metabolism SBML MML
lbi00623 2,4-Dichlorobenzoate degradation SBML MML
lbi00624 1- and 2-Methylnaphthalene degradation SBML MML
lbi00630 Glyoxylate and dicarboxylate metabolism SBML MML
lbi00631 1,2-Dichloroethane degradation SBML MML
lbi00632 (Undocumented) SBML MML
lbi00640 Propanoate metabolism SBML MML
lbi00641 3-Chloroacrylic acid degradation SBML MML
lbi00642 Ethylbenzene degradation SBML MML
lbi00650 Butanoate metabolism SBML MML
lbi00660 C5-Branched dibasic acid metabolism SBML MML
lbi00670 One carbon pool by folate SBML MML
lbi00680 Methane metabolism SBML MML
lbi00710 (Undocumented) SBML MML
lbi00720 (Undocumented) SBML MML
lbi00730 Thiamine metabolism SBML MML
lbi00740 Riboflavin metabolism SBML MML
lbi00750 Vitamin B6 metabolism SBML MML
lbi00760 Nicotinate and nicotinamide metabolism SBML MML
lbi00770 Pantothenate and CoA biosynthesis SBML MML
lbi00780 Biotin metabolism SBML MML
lbi00785 Lipoic acid metabolism SBML MML
lbi00790 Folate biosynthesis SBML MML
lbi00860 Porphyrin and chlorophyll metabolism SBML MML
lbi00900 Terpenoid backbone biosynthesis SBML MML
lbi00903 (Undocumented) SBML MML
lbi00910 Nitrogen metabolism SBML MML
lbi00920 Sulfur metabolism SBML MML
lbi00930 Caprolactam degradation SBML MML
lbi00940 (Undocumented) SBML MML
lbi00950 (Undocumented) SBML MML
lbi00960 (Undocumented) SBML MML
lbi00970 Aminoacyl-tRNA biosynthesis SBML MML
lbi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
lbi00982 (Undocumented) SBML MML
lbi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.