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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hpy: Helicobacter pylori 26695

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hpy00010 Glycolysis / Gluconeogenesis SBML MML
hpy00020 Citrate cycle (TCA cycle) SBML MML
hpy00030 Pentose phosphate pathway SBML MML
hpy00040 Pentose and glucuronate interconversions SBML MML
hpy00051 Fructose and mannose metabolism SBML MML
hpy00052 Galactose metabolism SBML MML
hpy00061 Fatty acid biosynthesis SBML MML
hpy00071 Fatty acid metabolism SBML MML
hpy00072 Synthesis and degradation of ketone bodies SBML MML
hpy00100 (Undocumented) SBML MML
hpy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hpy00220 (Undocumented) SBML MML
hpy00230 Purine metabolism SBML MML
hpy00240 Pyrimidine metabolism SBML MML
hpy00251 (Undocumented) SBML MML
hpy00252 (Undocumented) SBML MML
hpy00260 Glycine, serine and threonine metabolism SBML MML
hpy00271 (Undocumented) SBML MML
hpy00272 (Undocumented) SBML MML
hpy00280 Valine, leucine and isoleucine degradation SBML MML
hpy00290 Valine, leucine and isoleucine biosynthesis SBML MML
hpy00300 Lysine biosynthesis SBML MML
hpy00310 Lysine degradation SBML MML
hpy00330 Arginine and proline metabolism SBML MML
hpy00340 Histidine metabolism SBML MML
hpy00350 Tyrosine metabolism SBML MML
hpy00360 Phenylalanine metabolism SBML MML
hpy00362 (Undocumented) SBML MML
hpy00380 Tryptophan metabolism SBML MML
hpy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hpy00410 beta-Alanine metabolism SBML MML
hpy00430 Taurine and hypotaurine metabolism SBML MML
hpy00450 Selenoamino acid metabolism SBML MML
hpy00460 (Undocumented) SBML MML
hpy00471 D-Glutamine and D-glutamate metabolism SBML MML
hpy00473 D-Alanine metabolism SBML MML
hpy00480 Glutathione metabolism SBML MML
hpy00500 Starch and sucrose metabolism SBML MML
hpy00520 Amino sugar and nucleotide sugar metabolism SBML MML
hpy00521 Streptomycin biosynthesis SBML MML
hpy00530 (Undocumented) SBML MML
hpy00540 Lipopolysaccharide biosynthesis SBML MML
hpy00550 Peptidoglycan biosynthesis SBML MML
hpy00561 Glycerolipid metabolism SBML MML
hpy00564 Glycerophospholipid metabolism SBML MML
hpy00620 Pyruvate metabolism SBML MML
hpy00628 Fluorene degradation SBML MML
hpy00630 Glyoxylate and dicarboxylate metabolism SBML MML
hpy00632 (Undocumented) SBML MML
hpy00640 Propanoate metabolism SBML MML
hpy00643 Styrene degradation SBML MML
hpy00650 Butanoate metabolism SBML MML
hpy00670 One carbon pool by folate SBML MML
hpy00680 Methane metabolism SBML MML
hpy00710 (Undocumented) SBML MML
hpy00720 (Undocumented) SBML MML
hpy00730 Thiamine metabolism SBML MML
hpy00740 Riboflavin metabolism SBML MML
hpy00750 Vitamin B6 metabolism SBML MML
hpy00760 Nicotinate and nicotinamide metabolism SBML MML
hpy00770 Pantothenate and CoA biosynthesis SBML MML
hpy00780 Biotin metabolism SBML MML
hpy00790 Folate biosynthesis SBML MML
hpy00791 Atrazine degradation SBML MML
hpy00860 Porphyrin and chlorophyll metabolism SBML MML
hpy00900 Terpenoid backbone biosynthesis SBML MML
hpy00910 Nitrogen metabolism SBML MML
hpy00920 Sulfur metabolism SBML MML
hpy00930 Caprolactam degradation SBML MML
hpy00940 (Undocumented) SBML MML
hpy00950 (Undocumented) SBML MML
hpy00970 Aminoacyl-tRNA biosynthesis SBML MML
hpy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.