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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hpa: Helicobacter pylori HPAG1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hpa00010 Glycolysis / Gluconeogenesis SBML MML
hpa00020 Citrate cycle (TCA cycle) SBML MML
hpa00030 Pentose phosphate pathway SBML MML
hpa00040 Pentose and glucuronate interconversions SBML MML
hpa00051 Fructose and mannose metabolism SBML MML
hpa00052 Galactose metabolism SBML MML
hpa00061 Fatty acid biosynthesis SBML MML
hpa00071 Fatty acid metabolism SBML MML
hpa00072 Synthesis and degradation of ketone bodies SBML MML
hpa00100 (Undocumented) SBML MML
hpa00120 (Undocumented) SBML MML
hpa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hpa00220 (Undocumented) SBML MML
hpa00230 Purine metabolism SBML MML
hpa00240 Pyrimidine metabolism SBML MML
hpa00251 (Undocumented) SBML MML
hpa00252 (Undocumented) SBML MML
hpa00260 Glycine, serine and threonine metabolism SBML MML
hpa00271 (Undocumented) SBML MML
hpa00272 (Undocumented) SBML MML
hpa00280 Valine, leucine and isoleucine degradation SBML MML
hpa00290 Valine, leucine and isoleucine biosynthesis SBML MML
hpa00300 Lysine biosynthesis SBML MML
hpa00310 Lysine degradation SBML MML
hpa00330 Arginine and proline metabolism SBML MML
hpa00340 Histidine metabolism SBML MML
hpa00350 Tyrosine metabolism SBML MML
hpa00360 Phenylalanine metabolism SBML MML
hpa00362 (Undocumented) SBML MML
hpa00380 Tryptophan metabolism SBML MML
hpa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hpa00401 Novobiocin biosynthesis SBML MML
hpa00410 beta-Alanine metabolism SBML MML
hpa00430 Taurine and hypotaurine metabolism SBML MML
hpa00440 Phosphonate and phosphinate metabolism SBML MML
hpa00450 Selenoamino acid metabolism SBML MML
hpa00460 (Undocumented) SBML MML
hpa00471 D-Glutamine and D-glutamate metabolism SBML MML
hpa00473 D-Alanine metabolism SBML MML
hpa00480 Glutathione metabolism SBML MML
hpa00500 Starch and sucrose metabolism SBML MML
hpa00520 Amino sugar and nucleotide sugar metabolism SBML MML
hpa00530 (Undocumented) SBML MML
hpa00540 Lipopolysaccharide biosynthesis SBML MML
hpa00550 Peptidoglycan biosynthesis SBML MML
hpa00561 Glycerolipid metabolism SBML MML
hpa00564 Glycerophospholipid metabolism SBML MML
hpa00620 Pyruvate metabolism SBML MML
hpa00624 1- and 2-Methylnaphthalene degradation SBML MML
hpa00628 Fluorene degradation SBML MML
hpa00630 Glyoxylate and dicarboxylate metabolism SBML MML
hpa00632 (Undocumented) SBML MML
hpa00640 Propanoate metabolism SBML MML
hpa00643 Styrene degradation SBML MML
hpa00650 Butanoate metabolism SBML MML
hpa00670 One carbon pool by folate SBML MML
hpa00680 Methane metabolism SBML MML
hpa00710 (Undocumented) SBML MML
hpa00720 (Undocumented) SBML MML
hpa00730 Thiamine metabolism SBML MML
hpa00740 Riboflavin metabolism SBML MML
hpa00750 Vitamin B6 metabolism SBML MML
hpa00760 Nicotinate and nicotinamide metabolism SBML MML
hpa00770 Pantothenate and CoA biosynthesis SBML MML
hpa00780 Biotin metabolism SBML MML
hpa00790 Folate biosynthesis SBML MML
hpa00791 Atrazine degradation SBML MML
hpa00860 Porphyrin and chlorophyll metabolism SBML MML
hpa00900 Terpenoid backbone biosynthesis SBML MML
hpa00903 (Undocumented) SBML MML
hpa00910 Nitrogen metabolism SBML MML
hpa00920 Sulfur metabolism SBML MML
hpa00930 Caprolactam degradation SBML MML
hpa00940 (Undocumented) SBML MML
hpa00950 (Undocumented) SBML MML
hpa00970 Aminoacyl-tRNA biosynthesis SBML MML
hpa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.