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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hne: Hyphomonas neptunium

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hne00010 Glycolysis / Gluconeogenesis SBML MML
hne00020 Citrate cycle (TCA cycle) SBML MML
hne00030 Pentose phosphate pathway SBML MML
hne00031 (Undocumented) SBML MML
hne00040 Pentose and glucuronate interconversions SBML MML
hne00051 Fructose and mannose metabolism SBML MML
hne00052 Galactose metabolism SBML MML
hne00061 Fatty acid biosynthesis SBML MML
hne00062 Fatty acid elongation in mitochondria SBML MML
hne00071 Fatty acid metabolism SBML MML
hne00072 Synthesis and degradation of ketone bodies SBML MML
hne00100 (Undocumented) SBML MML
hne00120 (Undocumented) SBML MML
hne00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hne00220 (Undocumented) SBML MML
hne00230 Purine metabolism SBML MML
hne00240 Pyrimidine metabolism SBML MML
hne00251 (Undocumented) SBML MML
hne00252 (Undocumented) SBML MML
hne00260 Glycine, serine and threonine metabolism SBML MML
hne00271 (Undocumented) SBML MML
hne00272 (Undocumented) SBML MML
hne00280 Valine, leucine and isoleucine degradation SBML MML
hne00281 Geraniol degradation SBML MML
hne00290 Valine, leucine and isoleucine biosynthesis SBML MML
hne00300 Lysine biosynthesis SBML MML
hne00310 Lysine degradation SBML MML
hne00311 Penicillin and cephalosporin biosynthesis SBML MML
hne00330 Arginine and proline metabolism SBML MML
hne00340 Histidine metabolism SBML MML
hne00350 Tyrosine metabolism SBML MML
hne00360 Phenylalanine metabolism SBML MML
hne00361 gamma-Hexachlorocyclohexane degradation SBML MML
hne00362 (Undocumented) SBML MML
hne00380 Tryptophan metabolism SBML MML
hne00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hne00401 Novobiocin biosynthesis SBML MML
hne00410 beta-Alanine metabolism SBML MML
hne00430 Taurine and hypotaurine metabolism SBML MML
hne00450 Selenoamino acid metabolism SBML MML
hne00460 (Undocumented) SBML MML
hne00471 D-Glutamine and D-glutamate metabolism SBML MML
hne00472 D-Arginine and D-ornithine metabolism SBML MML
hne00473 D-Alanine metabolism SBML MML
hne00480 Glutathione metabolism SBML MML
hne00500 Starch and sucrose metabolism SBML MML
hne00520 Amino sugar and nucleotide sugar metabolism SBML MML
hne00521 Streptomycin biosynthesis SBML MML
hne00523 Polyketide sugar unit biosynthesis SBML MML
hne00530 (Undocumented) SBML MML
hne00540 Lipopolysaccharide biosynthesis SBML MML
hne00550 Peptidoglycan biosynthesis SBML MML
hne00561 Glycerolipid metabolism SBML MML
hne00562 Inositol phosphate metabolism SBML MML
hne00564 Glycerophospholipid metabolism SBML MML
hne00590 Arachidonic acid metabolism SBML MML
hne00592 alpha-Linolenic acid metabolism SBML MML
hne00620 Pyruvate metabolism SBML MML
hne00622 Toluene and xylene degradation SBML MML
hne00624 1- and 2-Methylnaphthalene degradation SBML MML
hne00626 Naphthalene and anthracene degradation SBML MML
hne00630 Glyoxylate and dicarboxylate metabolism SBML MML
hne00631 1,2-Dichloroethane degradation SBML MML
hne00632 (Undocumented) SBML MML
hne00640 Propanoate metabolism SBML MML
hne00641 3-Chloroacrylic acid degradation SBML MML
hne00642 Ethylbenzene degradation SBML MML
hne00643 Styrene degradation SBML MML
hne00650 Butanoate metabolism SBML MML
hne00660 C5-Branched dibasic acid metabolism SBML MML
hne00670 One carbon pool by folate SBML MML
hne00680 Methane metabolism SBML MML
hne00710 (Undocumented) SBML MML
hne00720 (Undocumented) SBML MML
hne00730 Thiamine metabolism SBML MML
hne00740 Riboflavin metabolism SBML MML
hne00750 Vitamin B6 metabolism SBML MML
hne00760 Nicotinate and nicotinamide metabolism SBML MML
hne00770 Pantothenate and CoA biosynthesis SBML MML
hne00780 Biotin metabolism SBML MML
hne00785 Lipoic acid metabolism SBML MML
hne00790 Folate biosynthesis SBML MML
hne00860 Porphyrin and chlorophyll metabolism SBML MML
hne00900 Terpenoid backbone biosynthesis SBML MML
hne00903 (Undocumented) SBML MML
hne00910 Nitrogen metabolism SBML MML
hne00920 Sulfur metabolism SBML MML
hne00930 Caprolactam degradation SBML MML
hne00940 (Undocumented) SBML MML
hne00950 (Undocumented) SBML MML
hne00960 (Undocumented) SBML MML
hne00970 Aminoacyl-tRNA biosynthesis SBML MML
hne00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
hne00982 (Undocumented) SBML MML
hne00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.