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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hip: Haemophilus influenzae PittEE

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hip00010 Glycolysis / Gluconeogenesis SBML MML
hip00020 Citrate cycle (TCA cycle) SBML MML
hip00030 Pentose phosphate pathway SBML MML
hip00040 Pentose and glucuronate interconversions SBML MML
hip00051 Fructose and mannose metabolism SBML MML
hip00052 Galactose metabolism SBML MML
hip00061 Fatty acid biosynthesis SBML MML
hip00100 (Undocumented) SBML MML
hip00120 (Undocumented) SBML MML
hip00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hip00220 (Undocumented) SBML MML
hip00230 Purine metabolism SBML MML
hip00240 Pyrimidine metabolism SBML MML
hip00251 (Undocumented) SBML MML
hip00252 (Undocumented) SBML MML
hip00260 Glycine, serine and threonine metabolism SBML MML
hip00271 (Undocumented) SBML MML
hip00272 (Undocumented) SBML MML
hip00280 Valine, leucine and isoleucine degradation SBML MML
hip00290 Valine, leucine and isoleucine biosynthesis SBML MML
hip00300 Lysine biosynthesis SBML MML
hip00310 Lysine degradation SBML MML
hip00330 Arginine and proline metabolism SBML MML
hip00340 Histidine metabolism SBML MML
hip00350 Tyrosine metabolism SBML MML
hip00360 Phenylalanine metabolism SBML MML
hip00380 Tryptophan metabolism SBML MML
hip00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hip00401 Novobiocin biosynthesis SBML MML
hip00430 Taurine and hypotaurine metabolism SBML MML
hip00450 Selenoamino acid metabolism SBML MML
hip00460 (Undocumented) SBML MML
hip00471 D-Glutamine and D-glutamate metabolism SBML MML
hip00473 D-Alanine metabolism SBML MML
hip00480 Glutathione metabolism SBML MML
hip00500 Starch and sucrose metabolism SBML MML
hip00520 Amino sugar and nucleotide sugar metabolism SBML MML
hip00521 Streptomycin biosynthesis SBML MML
hip00530 (Undocumented) SBML MML
hip00540 Lipopolysaccharide biosynthesis SBML MML
hip00550 Peptidoglycan biosynthesis SBML MML
hip00561 Glycerolipid metabolism SBML MML
hip00562 Inositol phosphate metabolism SBML MML
hip00564 Glycerophospholipid metabolism SBML MML
hip00620 Pyruvate metabolism SBML MML
hip00630 Glyoxylate and dicarboxylate metabolism SBML MML
hip00632 (Undocumented) SBML MML
hip00633 Trinitrotoluene degradation SBML MML
hip00640 Propanoate metabolism SBML MML
hip00650 Butanoate metabolism SBML MML
hip00660 C5-Branched dibasic acid metabolism SBML MML
hip00670 One carbon pool by folate SBML MML
hip00680 Methane metabolism SBML MML
hip00710 (Undocumented) SBML MML
hip00720 (Undocumented) SBML MML
hip00730 Thiamine metabolism SBML MML
hip00740 Riboflavin metabolism SBML MML
hip00750 Vitamin B6 metabolism SBML MML
hip00760 Nicotinate and nicotinamide metabolism SBML MML
hip00770 Pantothenate and CoA biosynthesis SBML MML
hip00780 Biotin metabolism SBML MML
hip00790 Folate biosynthesis SBML MML
hip00791 Atrazine degradation SBML MML
hip00860 Porphyrin and chlorophyll metabolism SBML MML
hip00900 Terpenoid backbone biosynthesis SBML MML
hip00910 Nitrogen metabolism SBML MML
hip00920 Sulfur metabolism SBML MML
hip00940 (Undocumented) SBML MML
hip00950 (Undocumented) SBML MML
hip00970 Aminoacyl-tRNA biosynthesis SBML MML
hip00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
hip00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.