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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hhe: Helicobacter hepaticus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hhe00010 Glycolysis / Gluconeogenesis SBML MML
hhe00020 Citrate cycle (TCA cycle) SBML MML
hhe00030 Pentose phosphate pathway SBML MML
hhe00040 Pentose and glucuronate interconversions SBML MML
hhe00051 Fructose and mannose metabolism SBML MML
hhe00052 Galactose metabolism SBML MML
hhe00061 Fatty acid biosynthesis SBML MML
hhe00100 (Undocumented) SBML MML
hhe00120 (Undocumented) SBML MML
hhe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hhe00220 (Undocumented) SBML MML
hhe00230 Purine metabolism SBML MML
hhe00240 Pyrimidine metabolism SBML MML
hhe00251 (Undocumented) SBML MML
hhe00252 (Undocumented) SBML MML
hhe00260 Glycine, serine and threonine metabolism SBML MML
hhe00271 (Undocumented) SBML MML
hhe00272 (Undocumented) SBML MML
hhe00280 Valine, leucine and isoleucine degradation SBML MML
hhe00290 Valine, leucine and isoleucine biosynthesis SBML MML
hhe00300 Lysine biosynthesis SBML MML
hhe00310 Lysine degradation SBML MML
hhe00330 Arginine and proline metabolism SBML MML
hhe00340 Histidine metabolism SBML MML
hhe00350 Tyrosine metabolism SBML MML
hhe00360 Phenylalanine metabolism SBML MML
hhe00362 (Undocumented) SBML MML
hhe00380 Tryptophan metabolism SBML MML
hhe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hhe00401 Novobiocin biosynthesis SBML MML
hhe00410 beta-Alanine metabolism SBML MML
hhe00430 Taurine and hypotaurine metabolism SBML MML
hhe00450 Selenoamino acid metabolism SBML MML
hhe00460 (Undocumented) SBML MML
hhe00471 D-Glutamine and D-glutamate metabolism SBML MML
hhe00473 D-Alanine metabolism SBML MML
hhe00500 Starch and sucrose metabolism SBML MML
hhe00520 Amino sugar and nucleotide sugar metabolism SBML MML
hhe00521 Streptomycin biosynthesis SBML MML
hhe00523 Polyketide sugar unit biosynthesis SBML MML
hhe00530 (Undocumented) SBML MML
hhe00540 Lipopolysaccharide biosynthesis SBML MML
hhe00550 Peptidoglycan biosynthesis SBML MML
hhe00561 Glycerolipid metabolism SBML MML
hhe00564 Glycerophospholipid metabolism SBML MML
hhe00620 Pyruvate metabolism SBML MML
hhe00624 1- and 2-Methylnaphthalene degradation SBML MML
hhe00630 Glyoxylate and dicarboxylate metabolism SBML MML
hhe00632 (Undocumented) SBML MML
hhe00640 Propanoate metabolism SBML MML
hhe00650 Butanoate metabolism SBML MML
hhe00670 One carbon pool by folate SBML MML
hhe00680 Methane metabolism SBML MML
hhe00710 (Undocumented) SBML MML
hhe00720 (Undocumented) SBML MML
hhe00730 Thiamine metabolism SBML MML
hhe00740 Riboflavin metabolism SBML MML
hhe00750 Vitamin B6 metabolism SBML MML
hhe00760 Nicotinate and nicotinamide metabolism SBML MML
hhe00770 Pantothenate and CoA biosynthesis SBML MML
hhe00780 Biotin metabolism SBML MML
hhe00790 Folate biosynthesis SBML MML
hhe00791 Atrazine degradation SBML MML
hhe00860 Porphyrin and chlorophyll metabolism SBML MML
hhe00900 Terpenoid backbone biosynthesis SBML MML
hhe00910 Nitrogen metabolism SBML MML
hhe00920 Sulfur metabolism SBML MML
hhe00930 Caprolactam degradation SBML MML
hhe00940 (Undocumented) SBML MML
hhe00950 (Undocumented) SBML MML
hhe00960 (Undocumented) SBML MML
hhe00970 Aminoacyl-tRNA biosynthesis SBML MML
hhe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.