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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism gur: Geobacter uraniumreducens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
gur00010 Glycolysis / Gluconeogenesis SBML MML
gur00020 Citrate cycle (TCA cycle) SBML MML
gur00030 Pentose phosphate pathway SBML MML
gur00040 Pentose and glucuronate interconversions SBML MML
gur00051 Fructose and mannose metabolism SBML MML
gur00052 Galactose metabolism SBML MML
gur00053 Ascorbate and aldarate metabolism SBML MML
gur00061 Fatty acid biosynthesis SBML MML
gur00062 Fatty acid elongation in mitochondria SBML MML
gur00071 Fatty acid metabolism SBML MML
gur00072 Synthesis and degradation of ketone bodies SBML MML
gur00100 (Undocumented) SBML MML
gur00120 (Undocumented) SBML MML
gur00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
gur00220 (Undocumented) SBML MML
gur00230 Purine metabolism SBML MML
gur00240 Pyrimidine metabolism SBML MML
gur00251 (Undocumented) SBML MML
gur00252 (Undocumented) SBML MML
gur00260 Glycine, serine and threonine metabolism SBML MML
gur00271 (Undocumented) SBML MML
gur00272 (Undocumented) SBML MML
gur00280 Valine, leucine and isoleucine degradation SBML MML
gur00281 Geraniol degradation SBML MML
gur00290 Valine, leucine and isoleucine biosynthesis SBML MML
gur00300 Lysine biosynthesis SBML MML
gur00310 Lysine degradation SBML MML
gur00330 Arginine and proline metabolism SBML MML
gur00340 Histidine metabolism SBML MML
gur00350 Tyrosine metabolism SBML MML
gur00360 Phenylalanine metabolism SBML MML
gur00361 gamma-Hexachlorocyclohexane degradation SBML MML
gur00362 (Undocumented) SBML MML
gur00380 Tryptophan metabolism SBML MML
gur00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
gur00401 Novobiocin biosynthesis SBML MML
gur00410 beta-Alanine metabolism SBML MML
gur00430 Taurine and hypotaurine metabolism SBML MML
gur00440 Phosphonate and phosphinate metabolism SBML MML
gur00450 Selenoamino acid metabolism SBML MML
gur00460 (Undocumented) SBML MML
gur00471 D-Glutamine and D-glutamate metabolism SBML MML
gur00473 D-Alanine metabolism SBML MML
gur00480 Glutathione metabolism SBML MML
gur00500 Starch and sucrose metabolism SBML MML
gur00520 Amino sugar and nucleotide sugar metabolism SBML MML
gur00521 Streptomycin biosynthesis SBML MML
gur00523 Polyketide sugar unit biosynthesis SBML MML
gur00530 (Undocumented) SBML MML
gur00540 Lipopolysaccharide biosynthesis SBML MML
gur00550 Peptidoglycan biosynthesis SBML MML
gur00561 Glycerolipid metabolism SBML MML
gur00562 Inositol phosphate metabolism SBML MML
gur00564 Glycerophospholipid metabolism SBML MML
gur00592 alpha-Linolenic acid metabolism SBML MML
gur00620 Pyruvate metabolism SBML MML
gur00624 1- and 2-Methylnaphthalene degradation SBML MML
gur00626 Naphthalene and anthracene degradation SBML MML
gur00628 Fluorene degradation SBML MML
gur00630 Glyoxylate and dicarboxylate metabolism SBML MML
gur00631 1,2-Dichloroethane degradation SBML MML
gur00632 (Undocumented) SBML MML
gur00640 Propanoate metabolism SBML MML
gur00641 3-Chloroacrylic acid degradation SBML MML
gur00643 Styrene degradation SBML MML
gur00650 Butanoate metabolism SBML MML
gur00660 C5-Branched dibasic acid metabolism SBML MML
gur00670 One carbon pool by folate SBML MML
gur00680 Methane metabolism SBML MML
gur00710 (Undocumented) SBML MML
gur00720 (Undocumented) SBML MML
gur00730 Thiamine metabolism SBML MML
gur00740 Riboflavin metabolism SBML MML
gur00750 Vitamin B6 metabolism SBML MML
gur00760 Nicotinate and nicotinamide metabolism SBML MML
gur00770 Pantothenate and CoA biosynthesis SBML MML
gur00780 Biotin metabolism SBML MML
gur00785 Lipoic acid metabolism SBML MML
gur00790 Folate biosynthesis SBML MML
gur00860 Porphyrin and chlorophyll metabolism SBML MML
gur00900 Terpenoid backbone biosynthesis SBML MML
gur00903 (Undocumented) SBML MML
gur00910 Nitrogen metabolism SBML MML
gur00920 Sulfur metabolism SBML MML
gur00930 Caprolactam degradation SBML MML
gur00940 (Undocumented) SBML MML
gur00941 (Undocumented) SBML MML
gur00950 (Undocumented) SBML MML
gur00970 Aminoacyl-tRNA biosynthesis SBML MML
gur00982 (Undocumented) SBML MML
gur00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.