This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism gme: Geobacter metallireducens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
gme00010 Glycolysis / Gluconeogenesis SBML MML
gme00020 Citrate cycle (TCA cycle) SBML MML
gme00030 Pentose phosphate pathway SBML MML
gme00040 Pentose and glucuronate interconversions SBML MML
gme00051 Fructose and mannose metabolism SBML MML
gme00052 Galactose metabolism SBML MML
gme00061 Fatty acid biosynthesis SBML MML
gme00071 Fatty acid metabolism SBML MML
gme00072 Synthesis and degradation of ketone bodies SBML MML
gme00100 (Undocumented) SBML MML
gme00120 (Undocumented) SBML MML
gme00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
gme00140 (Undocumented) SBML MML
gme00220 (Undocumented) SBML MML
gme00230 Purine metabolism SBML MML
gme00240 Pyrimidine metabolism SBML MML
gme00251 (Undocumented) SBML MML
gme00252 (Undocumented) SBML MML
gme00260 Glycine, serine and threonine metabolism SBML MML
gme00271 (Undocumented) SBML MML
gme00272 (Undocumented) SBML MML
gme00280 Valine, leucine and isoleucine degradation SBML MML
gme00281 Geraniol degradation SBML MML
gme00290 Valine, leucine and isoleucine biosynthesis SBML MML
gme00300 Lysine biosynthesis SBML MML
gme00310 Lysine degradation SBML MML
gme00330 Arginine and proline metabolism SBML MML
gme00340 Histidine metabolism SBML MML
gme00350 Tyrosine metabolism SBML MML
gme00360 Phenylalanine metabolism SBML MML
gme00362 (Undocumented) SBML MML
gme00380 Tryptophan metabolism SBML MML
gme00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
gme00401 Novobiocin biosynthesis SBML MML
gme00410 beta-Alanine metabolism SBML MML
gme00430 Taurine and hypotaurine metabolism SBML MML
gme00440 Phosphonate and phosphinate metabolism SBML MML
gme00450 Selenoamino acid metabolism SBML MML
gme00471 D-Glutamine and D-glutamate metabolism SBML MML
gme00473 D-Alanine metabolism SBML MML
gme00480 Glutathione metabolism SBML MML
gme00500 Starch and sucrose metabolism SBML MML
gme00510 (Undocumented) SBML MML
gme00520 Amino sugar and nucleotide sugar metabolism SBML MML
gme00521 Streptomycin biosynthesis SBML MML
gme00523 Polyketide sugar unit biosynthesis SBML MML
gme00530 (Undocumented) SBML MML
gme00540 Lipopolysaccharide biosynthesis SBML MML
gme00550 Peptidoglycan biosynthesis SBML MML
gme00561 Glycerolipid metabolism SBML MML
gme00562 Inositol phosphate metabolism SBML MML
gme00564 Glycerophospholipid metabolism SBML MML
gme00592 alpha-Linolenic acid metabolism SBML MML
gme00620 Pyruvate metabolism SBML MML
gme00624 1- and 2-Methylnaphthalene degradation SBML MML
gme00625 (Undocumented) SBML MML
gme00628 Fluorene degradation SBML MML
gme00630 Glyoxylate and dicarboxylate metabolism SBML MML
gme00632 (Undocumented) SBML MML
gme00640 Propanoate metabolism SBML MML
gme00641 3-Chloroacrylic acid degradation SBML MML
gme00650 Butanoate metabolism SBML MML
gme00660 C5-Branched dibasic acid metabolism SBML MML
gme00670 One carbon pool by folate SBML MML
gme00680 Methane metabolism SBML MML
gme00710 (Undocumented) SBML MML
gme00720 (Undocumented) SBML MML
gme00730 Thiamine metabolism SBML MML
gme00740 Riboflavin metabolism SBML MML
gme00750 Vitamin B6 metabolism SBML MML
gme00760 Nicotinate and nicotinamide metabolism SBML MML
gme00770 Pantothenate and CoA biosynthesis SBML MML
gme00780 Biotin metabolism SBML MML
gme00785 Lipoic acid metabolism SBML MML
gme00790 Folate biosynthesis SBML MML
gme00791 Atrazine degradation SBML MML
gme00860 Porphyrin and chlorophyll metabolism SBML MML
gme00900 Terpenoid backbone biosynthesis SBML MML
gme00903 (Undocumented) SBML MML
gme00910 Nitrogen metabolism SBML MML
gme00920 Sulfur metabolism SBML MML
gme00930 Caprolactam degradation SBML MML
gme00940 (Undocumented) SBML MML
gme00941 (Undocumented) SBML MML
gme00950 (Undocumented) SBML MML
gme00970 Aminoacyl-tRNA biosynthesis SBML MML
gme00982 (Undocumented) SBML MML
gme00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.