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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism gdi: Gluconacetobacter diazotrophicus PAl 5 (Brazil)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
gdi00010 Glycolysis / Gluconeogenesis SBML MML
gdi00020 Citrate cycle (TCA cycle) SBML MML
gdi00030 Pentose phosphate pathway SBML MML
gdi00031 (Undocumented) SBML MML
gdi00040 Pentose and glucuronate interconversions SBML MML
gdi00051 Fructose and mannose metabolism SBML MML
gdi00052 Galactose metabolism SBML MML
gdi00053 Ascorbate and aldarate metabolism SBML MML
gdi00061 Fatty acid biosynthesis SBML MML
gdi00071 Fatty acid metabolism SBML MML
gdi00100 (Undocumented) SBML MML
gdi00120 (Undocumented) SBML MML
gdi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
gdi00150 Androgen and estrogen metabolism SBML MML
gdi00220 (Undocumented) SBML MML
gdi00230 Purine metabolism SBML MML
gdi00240 Pyrimidine metabolism SBML MML
gdi00251 (Undocumented) SBML MML
gdi00252 (Undocumented) SBML MML
gdi00260 Glycine, serine and threonine metabolism SBML MML
gdi00271 (Undocumented) SBML MML
gdi00272 (Undocumented) SBML MML
gdi00280 Valine, leucine and isoleucine degradation SBML MML
gdi00281 Geraniol degradation SBML MML
gdi00290 Valine, leucine and isoleucine biosynthesis SBML MML
gdi00300 Lysine biosynthesis SBML MML
gdi00310 Lysine degradation SBML MML
gdi00330 Arginine and proline metabolism SBML MML
gdi00340 Histidine metabolism SBML MML
gdi00350 Tyrosine metabolism SBML MML
gdi00360 Phenylalanine metabolism SBML MML
gdi00361 gamma-Hexachlorocyclohexane degradation SBML MML
gdi00362 (Undocumented) SBML MML
gdi00363 Bisphenol A degradation SBML MML
gdi00364 Fluorobenzoate degradation SBML MML
gdi00380 Tryptophan metabolism SBML MML
gdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
gdi00401 Novobiocin biosynthesis SBML MML
gdi00410 beta-Alanine metabolism SBML MML
gdi00430 Taurine and hypotaurine metabolism SBML MML
gdi00450 Selenoamino acid metabolism SBML MML
gdi00460 (Undocumented) SBML MML
gdi00471 D-Glutamine and D-glutamate metabolism SBML MML
gdi00473 D-Alanine metabolism SBML MML
gdi00480 Glutathione metabolism SBML MML
gdi00500 Starch and sucrose metabolism SBML MML
gdi00520 Amino sugar and nucleotide sugar metabolism SBML MML
gdi00521 Streptomycin biosynthesis SBML MML
gdi00523 Polyketide sugar unit biosynthesis SBML MML
gdi00530 (Undocumented) SBML MML
gdi00540 Lipopolysaccharide biosynthesis SBML MML
gdi00550 Peptidoglycan biosynthesis SBML MML
gdi00561 Glycerolipid metabolism SBML MML
gdi00562 Inositol phosphate metabolism SBML MML
gdi00564 Glycerophospholipid metabolism SBML MML
gdi00565 Ether lipid metabolism SBML MML
gdi00590 Arachidonic acid metabolism SBML MML
gdi00620 Pyruvate metabolism SBML MML
gdi00623 2,4-Dichlorobenzoate degradation SBML MML
gdi00624 1- and 2-Methylnaphthalene degradation SBML MML
gdi00625 (Undocumented) SBML MML
gdi00626 Naphthalene and anthracene degradation SBML MML
gdi00627 1,4-Dichlorobenzene degradation SBML MML
gdi00630 Glyoxylate and dicarboxylate metabolism SBML MML
gdi00631 1,2-Dichloroethane degradation SBML MML
gdi00632 (Undocumented) SBML MML
gdi00640 Propanoate metabolism SBML MML
gdi00641 3-Chloroacrylic acid degradation SBML MML
gdi00643 Styrene degradation SBML MML
gdi00650 Butanoate metabolism SBML MML
gdi00660 C5-Branched dibasic acid metabolism SBML MML
gdi00670 One carbon pool by folate SBML MML
gdi00680 Methane metabolism SBML MML
gdi00710 (Undocumented) SBML MML
gdi00720 (Undocumented) SBML MML
gdi00730 Thiamine metabolism SBML MML
gdi00740 Riboflavin metabolism SBML MML
gdi00750 Vitamin B6 metabolism SBML MML
gdi00760 Nicotinate and nicotinamide metabolism SBML MML
gdi00770 Pantothenate and CoA biosynthesis SBML MML
gdi00780 Biotin metabolism SBML MML
gdi00785 Lipoic acid metabolism SBML MML
gdi00790 Folate biosynthesis SBML MML
gdi00791 Atrazine degradation SBML MML
gdi00860 Porphyrin and chlorophyll metabolism SBML MML
gdi00900 Terpenoid backbone biosynthesis SBML MML
gdi00903 (Undocumented) SBML MML
gdi00910 Nitrogen metabolism SBML MML
gdi00920 Sulfur metabolism SBML MML
gdi00930 Caprolactam degradation SBML MML
gdi00940 (Undocumented) SBML MML
gdi00941 (Undocumented) SBML MML
gdi00950 (Undocumented) SBML MML
gdi00960 (Undocumented) SBML MML
gdi00970 Aminoacyl-tRNA biosynthesis SBML MML
gdi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
gdi00982 (Undocumented) SBML MML
gdi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.