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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism fps: Flavobacterium psychrophilum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
fps00010 Glycolysis / Gluconeogenesis SBML MML
fps00020 Citrate cycle (TCA cycle) SBML MML
fps00030 Pentose phosphate pathway SBML MML
fps00040 Pentose and glucuronate interconversions SBML MML
fps00051 Fructose and mannose metabolism SBML MML
fps00052 Galactose metabolism SBML MML
fps00053 Ascorbate and aldarate metabolism SBML MML
fps00061 Fatty acid biosynthesis SBML MML
fps00062 Fatty acid elongation in mitochondria SBML MML
fps00071 Fatty acid metabolism SBML MML
fps00072 Synthesis and degradation of ketone bodies SBML MML
fps00100 (Undocumented) SBML MML
fps00120 (Undocumented) SBML MML
fps00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
fps00220 (Undocumented) SBML MML
fps00230 Purine metabolism SBML MML
fps00240 Pyrimidine metabolism SBML MML
fps00251 (Undocumented) SBML MML
fps00252 (Undocumented) SBML MML
fps00260 Glycine, serine and threonine metabolism SBML MML
fps00271 (Undocumented) SBML MML
fps00272 (Undocumented) SBML MML
fps00280 Valine, leucine and isoleucine degradation SBML MML
fps00281 Geraniol degradation SBML MML
fps00290 Valine, leucine and isoleucine biosynthesis SBML MML
fps00300 Lysine biosynthesis SBML MML
fps00310 Lysine degradation SBML MML
fps00330 Arginine and proline metabolism SBML MML
fps00340 Histidine metabolism SBML MML
fps00350 Tyrosine metabolism SBML MML
fps00360 Phenylalanine metabolism SBML MML
fps00361 gamma-Hexachlorocyclohexane degradation SBML MML
fps00362 (Undocumented) SBML MML
fps00380 Tryptophan metabolism SBML MML
fps00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
fps00401 Novobiocin biosynthesis SBML MML
fps00410 beta-Alanine metabolism SBML MML
fps00430 Taurine and hypotaurine metabolism SBML MML
fps00450 Selenoamino acid metabolism SBML MML
fps00460 (Undocumented) SBML MML
fps00471 D-Glutamine and D-glutamate metabolism SBML MML
fps00473 D-Alanine metabolism SBML MML
fps00480 Glutathione metabolism SBML MML
fps00500 Starch and sucrose metabolism SBML MML
fps00510 (Undocumented) SBML MML
fps00520 Amino sugar and nucleotide sugar metabolism SBML MML
fps00521 Streptomycin biosynthesis SBML MML
fps00523 Polyketide sugar unit biosynthesis SBML MML
fps00530 (Undocumented) SBML MML
fps00540 Lipopolysaccharide biosynthesis SBML MML
fps00550 Peptidoglycan biosynthesis SBML MML
fps00561 Glycerolipid metabolism SBML MML
fps00564 Glycerophospholipid metabolism SBML MML
fps00590 Arachidonic acid metabolism SBML MML
fps00592 alpha-Linolenic acid metabolism SBML MML
fps00620 Pyruvate metabolism SBML MML
fps00624 1- and 2-Methylnaphthalene degradation SBML MML
fps00626 Naphthalene and anthracene degradation SBML MML
fps00627 1,4-Dichlorobenzene degradation SBML MML
fps00630 Glyoxylate and dicarboxylate metabolism SBML MML
fps00632 (Undocumented) SBML MML
fps00633 Trinitrotoluene degradation SBML MML
fps00640 Propanoate metabolism SBML MML
fps00641 3-Chloroacrylic acid degradation SBML MML
fps00643 Styrene degradation SBML MML
fps00650 Butanoate metabolism SBML MML
fps00660 C5-Branched dibasic acid metabolism SBML MML
fps00670 One carbon pool by folate SBML MML
fps00680 Methane metabolism SBML MML
fps00710 (Undocumented) SBML MML
fps00720 (Undocumented) SBML MML
fps00730 Thiamine metabolism SBML MML
fps00740 Riboflavin metabolism SBML MML
fps00750 Vitamin B6 metabolism SBML MML
fps00760 Nicotinate and nicotinamide metabolism SBML MML
fps00770 Pantothenate and CoA biosynthesis SBML MML
fps00780 Biotin metabolism SBML MML
fps00785 Lipoic acid metabolism SBML MML
fps00790 Folate biosynthesis SBML MML
fps00860 Porphyrin and chlorophyll metabolism SBML MML
fps00900 Terpenoid backbone biosynthesis SBML MML
fps00903 (Undocumented) SBML MML
fps00910 Nitrogen metabolism SBML MML
fps00920 Sulfur metabolism SBML MML
fps00930 Caprolactam degradation SBML MML
fps00940 (Undocumented) SBML MML
fps00970 Aminoacyl-tRNA biosynthesis SBML MML
fps00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.