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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism fno: Fervidobacterium nodosum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
fno00010 Glycolysis / Gluconeogenesis SBML MML
fno00020 Citrate cycle (TCA cycle) SBML MML
fno00030 Pentose phosphate pathway SBML MML
fno00051 Fructose and mannose metabolism SBML MML
fno00052 Galactose metabolism SBML MML
fno00061 Fatty acid biosynthesis SBML MML
fno00071 Fatty acid metabolism SBML MML
fno00072 Synthesis and degradation of ketone bodies SBML MML
fno00100 (Undocumented) SBML MML
fno00120 (Undocumented) SBML MML
fno00220 (Undocumented) SBML MML
fno00230 Purine metabolism SBML MML
fno00240 Pyrimidine metabolism SBML MML
fno00251 (Undocumented) SBML MML
fno00252 (Undocumented) SBML MML
fno00260 Glycine, serine and threonine metabolism SBML MML
fno00271 (Undocumented) SBML MML
fno00272 (Undocumented) SBML MML
fno00280 Valine, leucine and isoleucine degradation SBML MML
fno00290 Valine, leucine and isoleucine biosynthesis SBML MML
fno00300 Lysine biosynthesis SBML MML
fno00310 Lysine degradation SBML MML
fno00330 Arginine and proline metabolism SBML MML
fno00340 Histidine metabolism SBML MML
fno00350 Tyrosine metabolism SBML MML
fno00360 Phenylalanine metabolism SBML MML
fno00361 gamma-Hexachlorocyclohexane degradation SBML MML
fno00380 Tryptophan metabolism SBML MML
fno00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
fno00401 Novobiocin biosynthesis SBML MML
fno00410 beta-Alanine metabolism SBML MML
fno00450 Selenoamino acid metabolism SBML MML
fno00460 (Undocumented) SBML MML
fno00471 D-Glutamine and D-glutamate metabolism SBML MML
fno00473 D-Alanine metabolism SBML MML
fno00500 Starch and sucrose metabolism SBML MML
fno00520 Amino sugar and nucleotide sugar metabolism SBML MML
fno00521 Streptomycin biosynthesis SBML MML
fno00530 (Undocumented) SBML MML
fno00550 Peptidoglycan biosynthesis SBML MML
fno00561 Glycerolipid metabolism SBML MML
fno00564 Glycerophospholipid metabolism SBML MML
fno00600 Sphingolipid metabolism SBML MML
fno00620 Pyruvate metabolism SBML MML
fno00624 1- and 2-Methylnaphthalene degradation SBML MML
fno00630 Glyoxylate and dicarboxylate metabolism SBML MML
fno00632 (Undocumented) SBML MML
fno00640 Propanoate metabolism SBML MML
fno00641 3-Chloroacrylic acid degradation SBML MML
fno00650 Butanoate metabolism SBML MML
fno00660 C5-Branched dibasic acid metabolism SBML MML
fno00670 One carbon pool by folate SBML MML
fno00680 Methane metabolism SBML MML
fno00710 (Undocumented) SBML MML
fno00720 (Undocumented) SBML MML
fno00730 Thiamine metabolism SBML MML
fno00740 Riboflavin metabolism SBML MML
fno00760 Nicotinate and nicotinamide metabolism SBML MML
fno00770 Pantothenate and CoA biosynthesis SBML MML
fno00780 Biotin metabolism SBML MML
fno00790 Folate biosynthesis SBML MML
fno00860 Porphyrin and chlorophyll metabolism SBML MML
fno00900 Terpenoid backbone biosynthesis SBML MML
fno00910 Nitrogen metabolism SBML MML
fno00920 Sulfur metabolism SBML MML
fno00941 (Undocumented) SBML MML
fno00960 (Undocumented) SBML MML
fno00970 Aminoacyl-tRNA biosynthesis SBML MML
fno00982 (Undocumented) SBML MML
fno00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.