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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism fma: Finegoldia magna

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
fma00010 Glycolysis / Gluconeogenesis SBML MML
fma00020 Citrate cycle (TCA cycle) SBML MML
fma00030 Pentose phosphate pathway SBML MML
fma00040 Pentose and glucuronate interconversions SBML MML
fma00051 Fructose and mannose metabolism SBML MML
fma00052 Galactose metabolism SBML MML
fma00053 Ascorbate and aldarate metabolism SBML MML
fma00061 Fatty acid biosynthesis SBML MML
fma00071 Fatty acid metabolism SBML MML
fma00100 (Undocumented) SBML MML
fma00120 (Undocumented) SBML MML
fma00220 (Undocumented) SBML MML
fma00230 Purine metabolism SBML MML
fma00240 Pyrimidine metabolism SBML MML
fma00251 (Undocumented) SBML MML
fma00252 (Undocumented) SBML MML
fma00260 Glycine, serine and threonine metabolism SBML MML
fma00271 (Undocumented) SBML MML
fma00272 (Undocumented) SBML MML
fma00280 Valine, leucine and isoleucine degradation SBML MML
fma00281 Geraniol degradation SBML MML
fma00290 Valine, leucine and isoleucine biosynthesis SBML MML
fma00300 Lysine biosynthesis SBML MML
fma00310 Lysine degradation SBML MML
fma00330 Arginine and proline metabolism SBML MML
fma00340 Histidine metabolism SBML MML
fma00350 Tyrosine metabolism SBML MML
fma00360 Phenylalanine metabolism SBML MML
fma00380 Tryptophan metabolism SBML MML
fma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
fma00401 Novobiocin biosynthesis SBML MML
fma00410 beta-Alanine metabolism SBML MML
fma00430 Taurine and hypotaurine metabolism SBML MML
fma00450 Selenoamino acid metabolism SBML MML
fma00460 (Undocumented) SBML MML
fma00471 D-Glutamine and D-glutamate metabolism SBML MML
fma00473 D-Alanine metabolism SBML MML
fma00500 Starch and sucrose metabolism SBML MML
fma00520 Amino sugar and nucleotide sugar metabolism SBML MML
fma00530 (Undocumented) SBML MML
fma00550 Peptidoglycan biosynthesis SBML MML
fma00561 Glycerolipid metabolism SBML MML
fma00564 Glycerophospholipid metabolism SBML MML
fma00620 Pyruvate metabolism SBML MML
fma00624 1- and 2-Methylnaphthalene degradation SBML MML
fma00630 Glyoxylate and dicarboxylate metabolism SBML MML
fma00632 (Undocumented) SBML MML
fma00633 Trinitrotoluene degradation SBML MML
fma00640 Propanoate metabolism SBML MML
fma00641 3-Chloroacrylic acid degradation SBML MML
fma00650 Butanoate metabolism SBML MML
fma00670 One carbon pool by folate SBML MML
fma00680 Methane metabolism SBML MML
fma00710 (Undocumented) SBML MML
fma00720 (Undocumented) SBML MML
fma00730 Thiamine metabolism SBML MML
fma00750 Vitamin B6 metabolism SBML MML
fma00760 Nicotinate and nicotinamide metabolism SBML MML
fma00770 Pantothenate and CoA biosynthesis SBML MML
fma00780 Biotin metabolism SBML MML
fma00790 Folate biosynthesis SBML MML
fma00860 Porphyrin and chlorophyll metabolism SBML MML
fma00900 Terpenoid backbone biosynthesis SBML MML
fma00903 (Undocumented) SBML MML
fma00910 Nitrogen metabolism SBML MML
fma00940 (Undocumented) SBML MML
fma00960 (Undocumented) SBML MML
fma00970 Aminoacyl-tRNA biosynthesis SBML MML
fma00982 (Undocumented) SBML MML
fma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.