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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism fal: Frankia alni

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
fal00010 Glycolysis / Gluconeogenesis SBML MML
fal00020 Citrate cycle (TCA cycle) SBML MML
fal00030 Pentose phosphate pathway SBML MML
fal00031 (Undocumented) SBML MML
fal00040 Pentose and glucuronate interconversions SBML MML
fal00051 Fructose and mannose metabolism SBML MML
fal00052 Galactose metabolism SBML MML
fal00053 Ascorbate and aldarate metabolism SBML MML
fal00061 Fatty acid biosynthesis SBML MML
fal00062 Fatty acid elongation in mitochondria SBML MML
fal00071 Fatty acid metabolism SBML MML
fal00072 Synthesis and degradation of ketone bodies SBML MML
fal00100 (Undocumented) SBML MML
fal00120 (Undocumented) SBML MML
fal00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
fal00150 Androgen and estrogen metabolism SBML MML
fal00220 (Undocumented) SBML MML
fal00230 Purine metabolism SBML MML
fal00240 Pyrimidine metabolism SBML MML
fal00251 (Undocumented) SBML MML
fal00252 (Undocumented) SBML MML
fal00260 Glycine, serine and threonine metabolism SBML MML
fal00271 (Undocumented) SBML MML
fal00272 (Undocumented) SBML MML
fal00280 Valine, leucine and isoleucine degradation SBML MML
fal00281 Geraniol degradation SBML MML
fal00290 Valine, leucine and isoleucine biosynthesis SBML MML
fal00300 Lysine biosynthesis SBML MML
fal00310 Lysine degradation SBML MML
fal00330 Arginine and proline metabolism SBML MML
fal00340 Histidine metabolism SBML MML
fal00350 Tyrosine metabolism SBML MML
fal00360 Phenylalanine metabolism SBML MML
fal00361 gamma-Hexachlorocyclohexane degradation SBML MML
fal00362 (Undocumented) SBML MML
fal00364 Fluorobenzoate degradation SBML MML
fal00380 Tryptophan metabolism SBML MML
fal00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
fal00401 Novobiocin biosynthesis SBML MML
fal00410 beta-Alanine metabolism SBML MML
fal00430 Taurine and hypotaurine metabolism SBML MML
fal00440 Phosphonate and phosphinate metabolism SBML MML
fal00450 Selenoamino acid metabolism SBML MML
fal00460 (Undocumented) SBML MML
fal00471 D-Glutamine and D-glutamate metabolism SBML MML
fal00473 D-Alanine metabolism SBML MML
fal00480 Glutathione metabolism SBML MML
fal00500 Starch and sucrose metabolism SBML MML
fal00510 (Undocumented) SBML MML
fal00520 Amino sugar and nucleotide sugar metabolism SBML MML
fal00521 Streptomycin biosynthesis SBML MML
fal00523 Polyketide sugar unit biosynthesis SBML MML
fal00530 (Undocumented) SBML MML
fal00540 Lipopolysaccharide biosynthesis SBML MML
fal00550 Peptidoglycan biosynthesis SBML MML
fal00561 Glycerolipid metabolism SBML MML
fal00562 Inositol phosphate metabolism SBML MML
fal00564 Glycerophospholipid metabolism SBML MML
fal00565 Ether lipid metabolism SBML MML
fal00590 Arachidonic acid metabolism SBML MML
fal00592 alpha-Linolenic acid metabolism SBML MML
fal00620 Pyruvate metabolism SBML MML
fal00621 (Undocumented) SBML MML
fal00622 Toluene and xylene degradation SBML MML
fal00624 1- and 2-Methylnaphthalene degradation SBML MML
fal00626 Naphthalene and anthracene degradation SBML MML
fal00627 1,4-Dichlorobenzene degradation SBML MML
fal00628 Fluorene degradation SBML MML
fal00630 Glyoxylate and dicarboxylate metabolism SBML MML
fal00632 (Undocumented) SBML MML
fal00640 Propanoate metabolism SBML MML
fal00641 3-Chloroacrylic acid degradation SBML MML
fal00642 Ethylbenzene degradation SBML MML
fal00643 Styrene degradation SBML MML
fal00650 Butanoate metabolism SBML MML
fal00660 C5-Branched dibasic acid metabolism SBML MML
fal00670 One carbon pool by folate SBML MML
fal00680 Methane metabolism SBML MML
fal00710 (Undocumented) SBML MML
fal00720 (Undocumented) SBML MML
fal00730 Thiamine metabolism SBML MML
fal00740 Riboflavin metabolism SBML MML
fal00750 Vitamin B6 metabolism SBML MML
fal00760 Nicotinate and nicotinamide metabolism SBML MML
fal00770 Pantothenate and CoA biosynthesis SBML MML
fal00780 Biotin metabolism SBML MML
fal00785 Lipoic acid metabolism SBML MML
fal00790 Folate biosynthesis SBML MML
fal00860 Porphyrin and chlorophyll metabolism SBML MML
fal00900 Terpenoid backbone biosynthesis SBML MML
fal00902 Monoterpenoid biosynthesis SBML MML
fal00903 (Undocumented) SBML MML
fal00910 Nitrogen metabolism SBML MML
fal00920 Sulfur metabolism SBML MML
fal00930 Caprolactam degradation SBML MML
fal00940 (Undocumented) SBML MML
fal00941 (Undocumented) SBML MML
fal00950 (Undocumented) SBML MML
fal00970 Aminoacyl-tRNA biosynthesis SBML MML
fal00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
fal00982 (Undocumented) SBML MML
fal00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.