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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism esly: Solanum lycopersicum (tomato) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
esly00010 Glycolysis / Gluconeogenesis SBML MML
esly00020 Citrate cycle (TCA cycle) SBML MML
esly00030 Pentose phosphate pathway SBML MML
esly00031 (Undocumented) SBML MML
esly00040 Pentose and glucuronate interconversions SBML MML
esly00051 Fructose and mannose metabolism SBML MML
esly00052 Galactose metabolism SBML MML
esly00053 Ascorbate and aldarate metabolism SBML MML
esly00061 Fatty acid biosynthesis SBML MML
esly00071 Fatty acid metabolism SBML MML
esly00072 Synthesis and degradation of ketone bodies SBML MML
esly00100 (Undocumented) SBML MML
esly00120 (Undocumented) SBML MML
esly00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
esly00140 (Undocumented) SBML MML
esly00150 Androgen and estrogen metabolism SBML MML
esly00220 (Undocumented) SBML MML
esly00230 Purine metabolism SBML MML
esly00240 Pyrimidine metabolism SBML MML
esly00251 (Undocumented) SBML MML
esly00252 (Undocumented) SBML MML
esly00260 Glycine, serine and threonine metabolism SBML MML
esly00271 (Undocumented) SBML MML
esly00272 (Undocumented) SBML MML
esly00280 Valine, leucine and isoleucine degradation SBML MML
esly00281 Geraniol degradation SBML MML
esly00290 Valine, leucine and isoleucine biosynthesis SBML MML
esly00300 Lysine biosynthesis SBML MML
esly00310 Lysine degradation SBML MML
esly00330 Arginine and proline metabolism SBML MML
esly00340 Histidine metabolism SBML MML
esly00350 Tyrosine metabolism SBML MML
esly00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
esly00360 Phenylalanine metabolism SBML MML
esly00361 gamma-Hexachlorocyclohexane degradation SBML MML
esly00362 (Undocumented) SBML MML
esly00363 Bisphenol A degradation SBML MML
esly00380 Tryptophan metabolism SBML MML
esly00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
esly00401 Novobiocin biosynthesis SBML MML
esly00410 beta-Alanine metabolism SBML MML
esly00430 Taurine and hypotaurine metabolism SBML MML
esly00440 Phosphonate and phosphinate metabolism SBML MML
esly00450 Selenoamino acid metabolism SBML MML
esly00460 (Undocumented) SBML MML
esly00471 D-Glutamine and D-glutamate metabolism SBML MML
esly00480 Glutathione metabolism SBML MML
esly00500 Starch and sucrose metabolism SBML MML
esly00510 (Undocumented) SBML MML
esly00520 Amino sugar and nucleotide sugar metabolism SBML MML
esly00521 Streptomycin biosynthesis SBML MML
esly00523 Polyketide sugar unit biosynthesis SBML MML
esly00530 (Undocumented) SBML MML
esly00540 Lipopolysaccharide biosynthesis SBML MML
esly00550 Peptidoglycan biosynthesis SBML MML
esly00561 Glycerolipid metabolism SBML MML
esly00562 Inositol phosphate metabolism SBML MML
esly00564 Glycerophospholipid metabolism SBML MML
esly00565 Ether lipid metabolism SBML MML
esly00590 Arachidonic acid metabolism SBML MML
esly00591 Linoleic acid metabolism SBML MML
esly00592 alpha-Linolenic acid metabolism SBML MML
esly00600 Sphingolipid metabolism SBML MML
esly00620 Pyruvate metabolism SBML MML
esly00624 1- and 2-Methylnaphthalene degradation SBML MML
esly00626 Naphthalene and anthracene degradation SBML MML
esly00628 Fluorene degradation SBML MML
esly00630 Glyoxylate and dicarboxylate metabolism SBML MML
esly00632 (Undocumented) SBML MML
esly00640 Propanoate metabolism SBML MML
esly00641 3-Chloroacrylic acid degradation SBML MML
esly00642 Ethylbenzene degradation SBML MML
esly00643 Styrene degradation SBML MML
esly00650 Butanoate metabolism SBML MML
esly00670 One carbon pool by folate SBML MML
esly00680 Methane metabolism SBML MML
esly00710 (Undocumented) SBML MML
esly00720 (Undocumented) SBML MML
esly00730 Thiamine metabolism SBML MML
esly00740 Riboflavin metabolism SBML MML
esly00750 Vitamin B6 metabolism SBML MML
esly00760 Nicotinate and nicotinamide metabolism SBML MML
esly00770 Pantothenate and CoA biosynthesis SBML MML
esly00780 Biotin metabolism SBML MML
esly00790 Folate biosynthesis SBML MML
esly00791 Atrazine degradation SBML MML
esly00860 Porphyrin and chlorophyll metabolism SBML MML
esly00900 Terpenoid backbone biosynthesis SBML MML
esly00901 (Undocumented) SBML MML
esly00903 (Undocumented) SBML MML
esly00904 (Undocumented) SBML MML
esly00906 Carotenoid biosynthesis SBML MML
esly00908 (Undocumented) SBML MML
esly00910 Nitrogen metabolism SBML MML
esly00920 Sulfur metabolism SBML MML
esly00930 Caprolactam degradation SBML MML
esly00940 (Undocumented) SBML MML
esly00941 (Undocumented) SBML MML
esly00944 (Undocumented) SBML MML
esly00950 (Undocumented) SBML MML
esly00960 (Undocumented) SBML MML
esly00970 Aminoacyl-tRNA biosynthesis SBML MML
esly00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
esly00982 (Undocumented) SBML MML
esly00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.