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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism eptp: Populus tremula (European aspen) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
eptp00010 Glycolysis / Gluconeogenesis SBML MML
eptp00020 Citrate cycle (TCA cycle) SBML MML
eptp00030 Pentose phosphate pathway SBML MML
eptp00031 (Undocumented) SBML MML
eptp00040 Pentose and glucuronate interconversions SBML MML
eptp00051 Fructose and mannose metabolism SBML MML
eptp00052 Galactose metabolism SBML MML
eptp00053 Ascorbate and aldarate metabolism SBML MML
eptp00061 Fatty acid biosynthesis SBML MML
eptp00062 Fatty acid elongation in mitochondria SBML MML
eptp00071 Fatty acid metabolism SBML MML
eptp00072 Synthesis and degradation of ketone bodies SBML MML
eptp00100 (Undocumented) SBML MML
eptp00120 (Undocumented) SBML MML
eptp00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
eptp00150 Androgen and estrogen metabolism SBML MML
eptp00220 (Undocumented) SBML MML
eptp00230 Purine metabolism SBML MML
eptp00240 Pyrimidine metabolism SBML MML
eptp00251 (Undocumented) SBML MML
eptp00252 (Undocumented) SBML MML
eptp00260 Glycine, serine and threonine metabolism SBML MML
eptp00271 (Undocumented) SBML MML
eptp00272 (Undocumented) SBML MML
eptp00280 Valine, leucine and isoleucine degradation SBML MML
eptp00281 Geraniol degradation SBML MML
eptp00290 Valine, leucine and isoleucine biosynthesis SBML MML
eptp00300 Lysine biosynthesis SBML MML
eptp00310 Lysine degradation SBML MML
eptp00330 Arginine and proline metabolism SBML MML
eptp00340 Histidine metabolism SBML MML
eptp00350 Tyrosine metabolism SBML MML
eptp00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
eptp00360 Phenylalanine metabolism SBML MML
eptp00361 gamma-Hexachlorocyclohexane degradation SBML MML
eptp00362 (Undocumented) SBML MML
eptp00363 Bisphenol A degradation SBML MML
eptp00380 Tryptophan metabolism SBML MML
eptp00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
eptp00410 beta-Alanine metabolism SBML MML
eptp00430 Taurine and hypotaurine metabolism SBML MML
eptp00440 Phosphonate and phosphinate metabolism SBML MML
eptp00450 Selenoamino acid metabolism SBML MML
eptp00460 (Undocumented) SBML MML
eptp00471 D-Glutamine and D-glutamate metabolism SBML MML
eptp00480 Glutathione metabolism SBML MML
eptp00500 Starch and sucrose metabolism SBML MML
eptp00510 (Undocumented) SBML MML
eptp00520 Amino sugar and nucleotide sugar metabolism SBML MML
eptp00521 Streptomycin biosynthesis SBML MML
eptp00530 (Undocumented) SBML MML
eptp00550 Peptidoglycan biosynthesis SBML MML
eptp00561 Glycerolipid metabolism SBML MML
eptp00562 Inositol phosphate metabolism SBML MML
eptp00564 Glycerophospholipid metabolism SBML MML
eptp00565 Ether lipid metabolism SBML MML
eptp00590 Arachidonic acid metabolism SBML MML
eptp00591 Linoleic acid metabolism SBML MML
eptp00592 alpha-Linolenic acid metabolism SBML MML
eptp00600 Sphingolipid metabolism SBML MML
eptp00620 Pyruvate metabolism SBML MML
eptp00622 Toluene and xylene degradation SBML MML
eptp00623 2,4-Dichlorobenzoate degradation SBML MML
eptp00624 1- and 2-Methylnaphthalene degradation SBML MML
eptp00626 Naphthalene and anthracene degradation SBML MML
eptp00627 1,4-Dichlorobenzene degradation SBML MML
eptp00628 Fluorene degradation SBML MML
eptp00630 Glyoxylate and dicarboxylate metabolism SBML MML
eptp00632 (Undocumented) SBML MML
eptp00640 Propanoate metabolism SBML MML
eptp00641 3-Chloroacrylic acid degradation SBML MML
eptp00643 Styrene degradation SBML MML
eptp00650 Butanoate metabolism SBML MML
eptp00670 One carbon pool by folate SBML MML
eptp00680 Methane metabolism SBML MML
eptp00710 (Undocumented) SBML MML
eptp00720 (Undocumented) SBML MML
eptp00730 Thiamine metabolism SBML MML
eptp00740 Riboflavin metabolism SBML MML
eptp00750 Vitamin B6 metabolism SBML MML
eptp00760 Nicotinate and nicotinamide metabolism SBML MML
eptp00770 Pantothenate and CoA biosynthesis SBML MML
eptp00780 Biotin metabolism SBML MML
eptp00790 Folate biosynthesis SBML MML
eptp00860 Porphyrin and chlorophyll metabolism SBML MML
eptp00900 Terpenoid backbone biosynthesis SBML MML
eptp00901 (Undocumented) SBML MML
eptp00903 (Undocumented) SBML MML
eptp00904 (Undocumented) SBML MML
eptp00906 Carotenoid biosynthesis SBML MML
eptp00910 Nitrogen metabolism SBML MML
eptp00920 Sulfur metabolism SBML MML
eptp00930 Caprolactam degradation SBML MML
eptp00940 (Undocumented) SBML MML
eptp00941 (Undocumented) SBML MML
eptp00944 (Undocumented) SBML MML
eptp00950 (Undocumented) SBML MML
eptp00960 (Undocumented) SBML MML
eptp00970 Aminoacyl-tRNA biosynthesis SBML MML
eptp00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
eptp00982 (Undocumented) SBML MML
eptp00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.