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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism epop: Populus trichocarpa (black cottonwood) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
epop00010 Glycolysis / Gluconeogenesis SBML MML
epop00020 Citrate cycle (TCA cycle) SBML MML
epop00030 Pentose phosphate pathway SBML MML
epop00031 (Undocumented) SBML MML
epop00040 Pentose and glucuronate interconversions SBML MML
epop00051 Fructose and mannose metabolism SBML MML
epop00052 Galactose metabolism SBML MML
epop00053 Ascorbate and aldarate metabolism SBML MML
epop00061 Fatty acid biosynthesis SBML MML
epop00062 Fatty acid elongation in mitochondria SBML MML
epop00071 Fatty acid metabolism SBML MML
epop00072 Synthesis and degradation of ketone bodies SBML MML
epop00100 (Undocumented) SBML MML
epop00120 (Undocumented) SBML MML
epop00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
epop00140 (Undocumented) SBML MML
epop00150 Androgen and estrogen metabolism SBML MML
epop00220 (Undocumented) SBML MML
epop00230 Purine metabolism SBML MML
epop00240 Pyrimidine metabolism SBML MML
epop00251 (Undocumented) SBML MML
epop00252 (Undocumented) SBML MML
epop00260 Glycine, serine and threonine metabolism SBML MML
epop00271 (Undocumented) SBML MML
epop00272 (Undocumented) SBML MML
epop00280 Valine, leucine and isoleucine degradation SBML MML
epop00281 Geraniol degradation SBML MML
epop00290 Valine, leucine and isoleucine biosynthesis SBML MML
epop00300 Lysine biosynthesis SBML MML
epop00310 Lysine degradation SBML MML
epop00330 Arginine and proline metabolism SBML MML
epop00340 Histidine metabolism SBML MML
epop00350 Tyrosine metabolism SBML MML
epop00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
epop00360 Phenylalanine metabolism SBML MML
epop00361 gamma-Hexachlorocyclohexane degradation SBML MML
epop00362 (Undocumented) SBML MML
epop00363 Bisphenol A degradation SBML MML
epop00364 Fluorobenzoate degradation SBML MML
epop00380 Tryptophan metabolism SBML MML
epop00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
epop00401 Novobiocin biosynthesis SBML MML
epop00410 beta-Alanine metabolism SBML MML
epop00430 Taurine and hypotaurine metabolism SBML MML
epop00440 Phosphonate and phosphinate metabolism SBML MML
epop00450 Selenoamino acid metabolism SBML MML
epop00460 (Undocumented) SBML MML
epop00471 D-Glutamine and D-glutamate metabolism SBML MML
epop00472 D-Arginine and D-ornithine metabolism SBML MML
epop00480 Glutathione metabolism SBML MML
epop00500 Starch and sucrose metabolism SBML MML
epop00510 (Undocumented) SBML MML
epop00520 Amino sugar and nucleotide sugar metabolism SBML MML
epop00521 Streptomycin biosynthesis SBML MML
epop00523 Polyketide sugar unit biosynthesis SBML MML
epop00530 (Undocumented) SBML MML
epop00540 Lipopolysaccharide biosynthesis SBML MML
epop00550 Peptidoglycan biosynthesis SBML MML
epop00561 Glycerolipid metabolism SBML MML
epop00562 Inositol phosphate metabolism SBML MML
epop00564 Glycerophospholipid metabolism SBML MML
epop00565 Ether lipid metabolism SBML MML
epop00590 Arachidonic acid metabolism SBML MML
epop00591 Linoleic acid metabolism SBML MML
epop00592 alpha-Linolenic acid metabolism SBML MML
epop00600 Sphingolipid metabolism SBML MML
epop00620 Pyruvate metabolism SBML MML
epop00624 1- and 2-Methylnaphthalene degradation SBML MML
epop00625 (Undocumented) SBML MML
epop00626 Naphthalene and anthracene degradation SBML MML
epop00627 1,4-Dichlorobenzene degradation SBML MML
epop00628 Fluorene degradation SBML MML
epop00630 Glyoxylate and dicarboxylate metabolism SBML MML
epop00632 (Undocumented) SBML MML
epop00640 Propanoate metabolism SBML MML
epop00641 3-Chloroacrylic acid degradation SBML MML
epop00643 Styrene degradation SBML MML
epop00650 Butanoate metabolism SBML MML
epop00670 One carbon pool by folate SBML MML
epop00680 Methane metabolism SBML MML
epop00710 (Undocumented) SBML MML
epop00720 (Undocumented) SBML MML
epop00730 Thiamine metabolism SBML MML
epop00740 Riboflavin metabolism SBML MML
epop00750 Vitamin B6 metabolism SBML MML
epop00760 Nicotinate and nicotinamide metabolism SBML MML
epop00770 Pantothenate and CoA biosynthesis SBML MML
epop00780 Biotin metabolism SBML MML
epop00790 Folate biosynthesis SBML MML
epop00791 Atrazine degradation SBML MML
epop00860 Porphyrin and chlorophyll metabolism SBML MML
epop00900 Terpenoid backbone biosynthesis SBML MML
epop00901 (Undocumented) SBML MML
epop00903 (Undocumented) SBML MML
epop00904 (Undocumented) SBML MML
epop00906 Carotenoid biosynthesis SBML MML
epop00908 (Undocumented) SBML MML
epop00910 Nitrogen metabolism SBML MML
epop00920 Sulfur metabolism SBML MML
epop00930 Caprolactam degradation SBML MML
epop00940 (Undocumented) SBML MML
epop00941 (Undocumented) SBML MML
epop00944 (Undocumented) SBML MML
epop00950 (Undocumented) SBML MML
epop00960 (Undocumented) SBML MML
epop00970 Aminoacyl-tRNA biosynthesis SBML MML
epop00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
epop00982 (Undocumented) SBML MML
epop00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.