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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism eosj: Oryza sativa japonica (Japanese rice) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
eosj00010 Glycolysis / Gluconeogenesis SBML MML
eosj00020 Citrate cycle (TCA cycle) SBML MML
eosj00030 Pentose phosphate pathway SBML MML
eosj00031 (Undocumented) SBML MML
eosj00040 Pentose and glucuronate interconversions SBML MML
eosj00051 Fructose and mannose metabolism SBML MML
eosj00052 Galactose metabolism SBML MML
eosj00053 Ascorbate and aldarate metabolism SBML MML
eosj00061 Fatty acid biosynthesis SBML MML
eosj00062 Fatty acid elongation in mitochondria SBML MML
eosj00071 Fatty acid metabolism SBML MML
eosj00072 Synthesis and degradation of ketone bodies SBML MML
eosj00100 (Undocumented) SBML MML
eosj00120 (Undocumented) SBML MML
eosj00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
eosj00140 (Undocumented) SBML MML
eosj00150 Androgen and estrogen metabolism SBML MML
eosj00220 (Undocumented) SBML MML
eosj00230 Purine metabolism SBML MML
eosj00232 Caffeine metabolism SBML MML
eosj00240 Pyrimidine metabolism SBML MML
eosj00251 (Undocumented) SBML MML
eosj00252 (Undocumented) SBML MML
eosj00260 Glycine, serine and threonine metabolism SBML MML
eosj00271 (Undocumented) SBML MML
eosj00272 (Undocumented) SBML MML
eosj00280 Valine, leucine and isoleucine degradation SBML MML
eosj00281 Geraniol degradation SBML MML
eosj00290 Valine, leucine and isoleucine biosynthesis SBML MML
eosj00300 Lysine biosynthesis SBML MML
eosj00310 Lysine degradation SBML MML
eosj00311 Penicillin and cephalosporin biosynthesis SBML MML
eosj00330 Arginine and proline metabolism SBML MML
eosj00340 Histidine metabolism SBML MML
eosj00350 Tyrosine metabolism SBML MML
eosj00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
eosj00360 Phenylalanine metabolism SBML MML
eosj00361 gamma-Hexachlorocyclohexane degradation SBML MML
eosj00362 (Undocumented) SBML MML
eosj00363 Bisphenol A degradation SBML MML
eosj00380 Tryptophan metabolism SBML MML
eosj00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
eosj00401 Novobiocin biosynthesis SBML MML
eosj00410 beta-Alanine metabolism SBML MML
eosj00430 Taurine and hypotaurine metabolism SBML MML
eosj00440 Phosphonate and phosphinate metabolism SBML MML
eosj00450 Selenoamino acid metabolism SBML MML
eosj00460 (Undocumented) SBML MML
eosj00471 D-Glutamine and D-glutamate metabolism SBML MML
eosj00472 D-Arginine and D-ornithine metabolism SBML MML
eosj00473 D-Alanine metabolism SBML MML
eosj00480 Glutathione metabolism SBML MML
eosj00500 Starch and sucrose metabolism SBML MML
eosj00510 (Undocumented) SBML MML
eosj00520 Amino sugar and nucleotide sugar metabolism SBML MML
eosj00521 Streptomycin biosynthesis SBML MML
eosj00523 Polyketide sugar unit biosynthesis SBML MML
eosj00530 (Undocumented) SBML MML
eosj00540 Lipopolysaccharide biosynthesis SBML MML
eosj00550 Peptidoglycan biosynthesis SBML MML
eosj00561 Glycerolipid metabolism SBML MML
eosj00562 Inositol phosphate metabolism SBML MML
eosj00564 Glycerophospholipid metabolism SBML MML
eosj00565 Ether lipid metabolism SBML MML
eosj00590 Arachidonic acid metabolism SBML MML
eosj00591 Linoleic acid metabolism SBML MML
eosj00592 alpha-Linolenic acid metabolism SBML MML
eosj00600 Sphingolipid metabolism SBML MML
eosj00620 Pyruvate metabolism SBML MML
eosj00621 (Undocumented) SBML MML
eosj00622 Toluene and xylene degradation SBML MML
eosj00623 2,4-Dichlorobenzoate degradation SBML MML
eosj00624 1- and 2-Methylnaphthalene degradation SBML MML
eosj00625 (Undocumented) SBML MML
eosj00626 Naphthalene and anthracene degradation SBML MML
eosj00627 1,4-Dichlorobenzene degradation SBML MML
eosj00628 Fluorene degradation SBML MML
eosj00630 Glyoxylate and dicarboxylate metabolism SBML MML
eosj00632 (Undocumented) SBML MML
eosj00633 Trinitrotoluene degradation SBML MML
eosj00640 Propanoate metabolism SBML MML
eosj00641 3-Chloroacrylic acid degradation SBML MML
eosj00642 Ethylbenzene degradation SBML MML
eosj00643 Styrene degradation SBML MML
eosj00650 Butanoate metabolism SBML MML
eosj00660 C5-Branched dibasic acid metabolism SBML MML
eosj00670 One carbon pool by folate SBML MML
eosj00680 Methane metabolism SBML MML
eosj00710 (Undocumented) SBML MML
eosj00720 (Undocumented) SBML MML
eosj00730 Thiamine metabolism SBML MML
eosj00740 Riboflavin metabolism SBML MML
eosj00750 Vitamin B6 metabolism SBML MML
eosj00760 Nicotinate and nicotinamide metabolism SBML MML
eosj00770 Pantothenate and CoA biosynthesis SBML MML
eosj00780 Biotin metabolism SBML MML
eosj00790 Folate biosynthesis SBML MML
eosj00791 Atrazine degradation SBML MML
eosj00830 Retinol metabolism SBML MML
eosj00860 Porphyrin and chlorophyll metabolism SBML MML
eosj00900 Terpenoid backbone biosynthesis SBML MML
eosj00901 (Undocumented) SBML MML
eosj00902 Monoterpenoid biosynthesis SBML MML
eosj00903 (Undocumented) SBML MML
eosj00904 (Undocumented) SBML MML
eosj00906 Carotenoid biosynthesis SBML MML
eosj00908 (Undocumented) SBML MML
eosj00910 Nitrogen metabolism SBML MML
eosj00920 Sulfur metabolism SBML MML
eosj00930 Caprolactam degradation SBML MML
eosj00940 (Undocumented) SBML MML
eosj00941 (Undocumented) SBML MML
eosj00944 (Undocumented) SBML MML
eosj00950 (Undocumented) SBML MML
eosj00960 (Undocumented) SBML MML
eosj00970 Aminoacyl-tRNA biosynthesis SBML MML
eosj00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
eosj00982 (Undocumented) SBML MML
eosj00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.