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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism eosa: Oryza sativa (rice) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
eosa00010 Glycolysis / Gluconeogenesis SBML MML
eosa00020 Citrate cycle (TCA cycle) SBML MML
eosa00030 Pentose phosphate pathway SBML MML
eosa00031 (Undocumented) SBML MML
eosa00040 Pentose and glucuronate interconversions SBML MML
eosa00051 Fructose and mannose metabolism SBML MML
eosa00052 Galactose metabolism SBML MML
eosa00053 Ascorbate and aldarate metabolism SBML MML
eosa00061 Fatty acid biosynthesis SBML MML
eosa00062 Fatty acid elongation in mitochondria SBML MML
eosa00071 Fatty acid metabolism SBML MML
eosa00072 Synthesis and degradation of ketone bodies SBML MML
eosa00100 (Undocumented) SBML MML
eosa00120 (Undocumented) SBML MML
eosa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
eosa00140 (Undocumented) SBML MML
eosa00150 Androgen and estrogen metabolism SBML MML
eosa00220 (Undocumented) SBML MML
eosa00230 Purine metabolism SBML MML
eosa00232 Caffeine metabolism SBML MML
eosa00240 Pyrimidine metabolism SBML MML
eosa00251 (Undocumented) SBML MML
eosa00252 (Undocumented) SBML MML
eosa00260 Glycine, serine and threonine metabolism SBML MML
eosa00271 (Undocumented) SBML MML
eosa00272 (Undocumented) SBML MML
eosa00280 Valine, leucine and isoleucine degradation SBML MML
eosa00281 Geraniol degradation SBML MML
eosa00290 Valine, leucine and isoleucine biosynthesis SBML MML
eosa00300 Lysine biosynthesis SBML MML
eosa00310 Lysine degradation SBML MML
eosa00311 Penicillin and cephalosporin biosynthesis SBML MML
eosa00330 Arginine and proline metabolism SBML MML
eosa00340 Histidine metabolism SBML MML
eosa00350 Tyrosine metabolism SBML MML
eosa00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
eosa00360 Phenylalanine metabolism SBML MML
eosa00361 gamma-Hexachlorocyclohexane degradation SBML MML
eosa00362 (Undocumented) SBML MML
eosa00363 Bisphenol A degradation SBML MML
eosa00364 Fluorobenzoate degradation SBML MML
eosa00380 Tryptophan metabolism SBML MML
eosa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
eosa00401 Novobiocin biosynthesis SBML MML
eosa00410 beta-Alanine metabolism SBML MML
eosa00430 Taurine and hypotaurine metabolism SBML MML
eosa00440 Phosphonate and phosphinate metabolism SBML MML
eosa00450 Selenoamino acid metabolism SBML MML
eosa00460 (Undocumented) SBML MML
eosa00471 D-Glutamine and D-glutamate metabolism SBML MML
eosa00472 D-Arginine and D-ornithine metabolism SBML MML
eosa00473 D-Alanine metabolism SBML MML
eosa00480 Glutathione metabolism SBML MML
eosa00500 Starch and sucrose metabolism SBML MML
eosa00510 (Undocumented) SBML MML
eosa00520 Amino sugar and nucleotide sugar metabolism SBML MML
eosa00521 Streptomycin biosynthesis SBML MML
eosa00523 Polyketide sugar unit biosynthesis SBML MML
eosa00530 (Undocumented) SBML MML
eosa00540 Lipopolysaccharide biosynthesis SBML MML
eosa00550 Peptidoglycan biosynthesis SBML MML
eosa00561 Glycerolipid metabolism SBML MML
eosa00562 Inositol phosphate metabolism SBML MML
eosa00564 Glycerophospholipid metabolism SBML MML
eosa00565 Ether lipid metabolism SBML MML
eosa00590 Arachidonic acid metabolism SBML MML
eosa00591 Linoleic acid metabolism SBML MML
eosa00592 alpha-Linolenic acid metabolism SBML MML
eosa00600 Sphingolipid metabolism SBML MML
eosa00620 Pyruvate metabolism SBML MML
eosa00621 (Undocumented) SBML MML
eosa00622 Toluene and xylene degradation SBML MML
eosa00623 2,4-Dichlorobenzoate degradation SBML MML
eosa00624 1- and 2-Methylnaphthalene degradation SBML MML
eosa00625 (Undocumented) SBML MML
eosa00626 Naphthalene and anthracene degradation SBML MML
eosa00627 1,4-Dichlorobenzene degradation SBML MML
eosa00628 Fluorene degradation SBML MML
eosa00630 Glyoxylate and dicarboxylate metabolism SBML MML
eosa00631 1,2-Dichloroethane degradation SBML MML
eosa00632 (Undocumented) SBML MML
eosa00633 Trinitrotoluene degradation SBML MML
eosa00640 Propanoate metabolism SBML MML
eosa00641 3-Chloroacrylic acid degradation SBML MML
eosa00642 Ethylbenzene degradation SBML MML
eosa00643 Styrene degradation SBML MML
eosa00650 Butanoate metabolism SBML MML
eosa00660 C5-Branched dibasic acid metabolism SBML MML
eosa00670 One carbon pool by folate SBML MML
eosa00680 Methane metabolism SBML MML
eosa00710 (Undocumented) SBML MML
eosa00720 (Undocumented) SBML MML
eosa00730 Thiamine metabolism SBML MML
eosa00740 Riboflavin metabolism SBML MML
eosa00750 Vitamin B6 metabolism SBML MML
eosa00760 Nicotinate and nicotinamide metabolism SBML MML
eosa00770 Pantothenate and CoA biosynthesis SBML MML
eosa00780 Biotin metabolism SBML MML
eosa00790 Folate biosynthesis SBML MML
eosa00791 Atrazine degradation SBML MML
eosa00830 Retinol metabolism SBML MML
eosa00860 Porphyrin and chlorophyll metabolism SBML MML
eosa00900 Terpenoid backbone biosynthesis SBML MML
eosa00901 (Undocumented) SBML MML
eosa00902 Monoterpenoid biosynthesis SBML MML
eosa00903 (Undocumented) SBML MML
eosa00904 (Undocumented) SBML MML
eosa00906 Carotenoid biosynthesis SBML MML
eosa00908 (Undocumented) SBML MML
eosa00910 Nitrogen metabolism SBML MML
eosa00920 Sulfur metabolism SBML MML
eosa00930 Caprolactam degradation SBML MML
eosa00940 (Undocumented) SBML MML
eosa00941 (Undocumented) SBML MML
eosa00944 (Undocumented) SBML MML
eosa00950 (Undocumented) SBML MML
eosa00960 (Undocumented) SBML MML
eosa00970 Aminoacyl-tRNA biosynthesis SBML MML
eosa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
eosa00982 (Undocumented) SBML MML
eosa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.