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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ent: Enterobacter sp. 638

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ent00010 Glycolysis / Gluconeogenesis SBML MML
ent00020 Citrate cycle (TCA cycle) SBML MML
ent00030 Pentose phosphate pathway SBML MML
ent00040 Pentose and glucuronate interconversions SBML MML
ent00051 Fructose and mannose metabolism SBML MML
ent00052 Galactose metabolism SBML MML
ent00053 Ascorbate and aldarate metabolism SBML MML
ent00061 Fatty acid biosynthesis SBML MML
ent00071 Fatty acid metabolism SBML MML
ent00100 (Undocumented) SBML MML
ent00120 (Undocumented) SBML MML
ent00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ent00150 Androgen and estrogen metabolism SBML MML
ent00220 (Undocumented) SBML MML
ent00230 Purine metabolism SBML MML
ent00240 Pyrimidine metabolism SBML MML
ent00251 (Undocumented) SBML MML
ent00252 (Undocumented) SBML MML
ent00260 Glycine, serine and threonine metabolism SBML MML
ent00271 (Undocumented) SBML MML
ent00272 (Undocumented) SBML MML
ent00280 Valine, leucine and isoleucine degradation SBML MML
ent00281 Geraniol degradation SBML MML
ent00290 Valine, leucine and isoleucine biosynthesis SBML MML
ent00300 Lysine biosynthesis SBML MML
ent00310 Lysine degradation SBML MML
ent00330 Arginine and proline metabolism SBML MML
ent00340 Histidine metabolism SBML MML
ent00350 Tyrosine metabolism SBML MML
ent00360 Phenylalanine metabolism SBML MML
ent00361 gamma-Hexachlorocyclohexane degradation SBML MML
ent00362 (Undocumented) SBML MML
ent00363 Bisphenol A degradation SBML MML
ent00364 Fluorobenzoate degradation SBML MML
ent00380 Tryptophan metabolism SBML MML
ent00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ent00401 Novobiocin biosynthesis SBML MML
ent00410 beta-Alanine metabolism SBML MML
ent00430 Taurine and hypotaurine metabolism SBML MML
ent00450 Selenoamino acid metabolism SBML MML
ent00460 (Undocumented) SBML MML
ent00471 D-Glutamine and D-glutamate metabolism SBML MML
ent00473 D-Alanine metabolism SBML MML
ent00480 Glutathione metabolism SBML MML
ent00500 Starch and sucrose metabolism SBML MML
ent00520 Amino sugar and nucleotide sugar metabolism SBML MML
ent00521 Streptomycin biosynthesis SBML MML
ent00523 Polyketide sugar unit biosynthesis SBML MML
ent00530 (Undocumented) SBML MML
ent00540 Lipopolysaccharide biosynthesis SBML MML
ent00550 Peptidoglycan biosynthesis SBML MML
ent00561 Glycerolipid metabolism SBML MML
ent00562 Inositol phosphate metabolism SBML MML
ent00564 Glycerophospholipid metabolism SBML MML
ent00590 Arachidonic acid metabolism SBML MML
ent00592 alpha-Linolenic acid metabolism SBML MML
ent00600 Sphingolipid metabolism SBML MML
ent00620 Pyruvate metabolism SBML MML
ent00622 Toluene and xylene degradation SBML MML
ent00624 1- and 2-Methylnaphthalene degradation SBML MML
ent00626 Naphthalene and anthracene degradation SBML MML
ent00627 1,4-Dichlorobenzene degradation SBML MML
ent00628 Fluorene degradation SBML MML
ent00630 Glyoxylate and dicarboxylate metabolism SBML MML
ent00632 (Undocumented) SBML MML
ent00633 Trinitrotoluene degradation SBML MML
ent00640 Propanoate metabolism SBML MML
ent00641 3-Chloroacrylic acid degradation SBML MML
ent00642 Ethylbenzene degradation SBML MML
ent00650 Butanoate metabolism SBML MML
ent00660 C5-Branched dibasic acid metabolism SBML MML
ent00670 One carbon pool by folate SBML MML
ent00680 Methane metabolism SBML MML
ent00710 (Undocumented) SBML MML
ent00720 (Undocumented) SBML MML
ent00730 Thiamine metabolism SBML MML
ent00740 Riboflavin metabolism SBML MML
ent00750 Vitamin B6 metabolism SBML MML
ent00760 Nicotinate and nicotinamide metabolism SBML MML
ent00770 Pantothenate and CoA biosynthesis SBML MML
ent00780 Biotin metabolism SBML MML
ent00785 Lipoic acid metabolism SBML MML
ent00790 Folate biosynthesis SBML MML
ent00791 Atrazine degradation SBML MML
ent00860 Porphyrin and chlorophyll metabolism SBML MML
ent00900 Terpenoid backbone biosynthesis SBML MML
ent00903 (Undocumented) SBML MML
ent00910 Nitrogen metabolism SBML MML
ent00920 Sulfur metabolism SBML MML
ent00930 Caprolactam degradation SBML MML
ent00940 (Undocumented) SBML MML
ent00950 (Undocumented) SBML MML
ent00960 (Undocumented) SBML MML
ent00970 Aminoacyl-tRNA biosynthesis SBML MML
ent00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ent00982 (Undocumented) SBML MML
ent00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.