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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism enbe: Nicotiana benthamiana (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
enbe00010 Glycolysis / Gluconeogenesis SBML MML
enbe00020 Citrate cycle (TCA cycle) SBML MML
enbe00030 Pentose phosphate pathway SBML MML
enbe00040 Pentose and glucuronate interconversions SBML MML
enbe00051 Fructose and mannose metabolism SBML MML
enbe00052 Galactose metabolism SBML MML
enbe00053 Ascorbate and aldarate metabolism SBML MML
enbe00061 Fatty acid biosynthesis SBML MML
enbe00071 Fatty acid metabolism SBML MML
enbe00072 Synthesis and degradation of ketone bodies SBML MML
enbe00100 (Undocumented) SBML MML
enbe00120 (Undocumented) SBML MML
enbe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
enbe00140 (Undocumented) SBML MML
enbe00150 Androgen and estrogen metabolism SBML MML
enbe00220 (Undocumented) SBML MML
enbe00230 Purine metabolism SBML MML
enbe00232 Caffeine metabolism SBML MML
enbe00240 Pyrimidine metabolism SBML MML
enbe00251 (Undocumented) SBML MML
enbe00252 (Undocumented) SBML MML
enbe00260 Glycine, serine and threonine metabolism SBML MML
enbe00271 (Undocumented) SBML MML
enbe00272 (Undocumented) SBML MML
enbe00280 Valine, leucine and isoleucine degradation SBML MML
enbe00281 Geraniol degradation SBML MML
enbe00290 Valine, leucine and isoleucine biosynthesis SBML MML
enbe00300 Lysine biosynthesis SBML MML
enbe00310 Lysine degradation SBML MML
enbe00330 Arginine and proline metabolism SBML MML
enbe00340 Histidine metabolism SBML MML
enbe00350 Tyrosine metabolism SBML MML
enbe00360 Phenylalanine metabolism SBML MML
enbe00361 gamma-Hexachlorocyclohexane degradation SBML MML
enbe00362 (Undocumented) SBML MML
enbe00363 Bisphenol A degradation SBML MML
enbe00380 Tryptophan metabolism SBML MML
enbe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
enbe00410 beta-Alanine metabolism SBML MML
enbe00430 Taurine and hypotaurine metabolism SBML MML
enbe00440 Phosphonate and phosphinate metabolism SBML MML
enbe00450 Selenoamino acid metabolism SBML MML
enbe00460 (Undocumented) SBML MML
enbe00480 Glutathione metabolism SBML MML
enbe00500 Starch and sucrose metabolism SBML MML
enbe00510 (Undocumented) SBML MML
enbe00520 Amino sugar and nucleotide sugar metabolism SBML MML
enbe00521 Streptomycin biosynthesis SBML MML
enbe00530 (Undocumented) SBML MML
enbe00540 Lipopolysaccharide biosynthesis SBML MML
enbe00550 Peptidoglycan biosynthesis SBML MML
enbe00561 Glycerolipid metabolism SBML MML
enbe00562 Inositol phosphate metabolism SBML MML
enbe00564 Glycerophospholipid metabolism SBML MML
enbe00565 Ether lipid metabolism SBML MML
enbe00590 Arachidonic acid metabolism SBML MML
enbe00591 Linoleic acid metabolism SBML MML
enbe00592 alpha-Linolenic acid metabolism SBML MML
enbe00600 Sphingolipid metabolism SBML MML
enbe00620 Pyruvate metabolism SBML MML
enbe00624 1- and 2-Methylnaphthalene degradation SBML MML
enbe00625 (Undocumented) SBML MML
enbe00626 Naphthalene and anthracene degradation SBML MML
enbe00630 Glyoxylate and dicarboxylate metabolism SBML MML
enbe00632 (Undocumented) SBML MML
enbe00640 Propanoate metabolism SBML MML
enbe00641 3-Chloroacrylic acid degradation SBML MML
enbe00642 Ethylbenzene degradation SBML MML
enbe00650 Butanoate metabolism SBML MML
enbe00660 C5-Branched dibasic acid metabolism SBML MML
enbe00670 One carbon pool by folate SBML MML
enbe00680 Methane metabolism SBML MML
enbe00710 (Undocumented) SBML MML
enbe00720 (Undocumented) SBML MML
enbe00730 Thiamine metabolism SBML MML
enbe00740 Riboflavin metabolism SBML MML
enbe00750 Vitamin B6 metabolism SBML MML
enbe00760 Nicotinate and nicotinamide metabolism SBML MML
enbe00770 Pantothenate and CoA biosynthesis SBML MML
enbe00780 Biotin metabolism SBML MML
enbe00790 Folate biosynthesis SBML MML
enbe00860 Porphyrin and chlorophyll metabolism SBML MML
enbe00900 Terpenoid backbone biosynthesis SBML MML
enbe00902 Monoterpenoid biosynthesis SBML MML
enbe00903 (Undocumented) SBML MML
enbe00904 (Undocumented) SBML MML
enbe00906 Carotenoid biosynthesis SBML MML
enbe00908 (Undocumented) SBML MML
enbe00910 Nitrogen metabolism SBML MML
enbe00920 Sulfur metabolism SBML MML
enbe00940 (Undocumented) SBML MML
enbe00941 (Undocumented) SBML MML
enbe00944 (Undocumented) SBML MML
enbe00950 (Undocumented) SBML MML
enbe00960 (Undocumented) SBML MML
enbe00970 Aminoacyl-tRNA biosynthesis SBML MML
enbe00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
enbe00982 (Undocumented) SBML MML
enbe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.