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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism emtr: Medicago truncatula (barrel medic) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
emtr00010 Glycolysis / Gluconeogenesis SBML MML
emtr00020 Citrate cycle (TCA cycle) SBML MML
emtr00030 Pentose phosphate pathway SBML MML
emtr00031 (Undocumented) SBML MML
emtr00040 Pentose and glucuronate interconversions SBML MML
emtr00051 Fructose and mannose metabolism SBML MML
emtr00052 Galactose metabolism SBML MML
emtr00053 Ascorbate and aldarate metabolism SBML MML
emtr00061 Fatty acid biosynthesis SBML MML
emtr00062 Fatty acid elongation in mitochondria SBML MML
emtr00071 Fatty acid metabolism SBML MML
emtr00072 Synthesis and degradation of ketone bodies SBML MML
emtr00100 (Undocumented) SBML MML
emtr00120 (Undocumented) SBML MML
emtr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
emtr00140 (Undocumented) SBML MML
emtr00150 Androgen and estrogen metabolism SBML MML
emtr00220 (Undocumented) SBML MML
emtr00230 Purine metabolism SBML MML
emtr00232 Caffeine metabolism SBML MML
emtr00240 Pyrimidine metabolism SBML MML
emtr00251 (Undocumented) SBML MML
emtr00252 (Undocumented) SBML MML
emtr00260 Glycine, serine and threonine metabolism SBML MML
emtr00271 (Undocumented) SBML MML
emtr00272 (Undocumented) SBML MML
emtr00280 Valine, leucine and isoleucine degradation SBML MML
emtr00281 Geraniol degradation SBML MML
emtr00290 Valine, leucine and isoleucine biosynthesis SBML MML
emtr00300 Lysine biosynthesis SBML MML
emtr00310 Lysine degradation SBML MML
emtr00330 Arginine and proline metabolism SBML MML
emtr00340 Histidine metabolism SBML MML
emtr00350 Tyrosine metabolism SBML MML
emtr00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
emtr00360 Phenylalanine metabolism SBML MML
emtr00361 gamma-Hexachlorocyclohexane degradation SBML MML
emtr00362 (Undocumented) SBML MML
emtr00363 Bisphenol A degradation SBML MML
emtr00380 Tryptophan metabolism SBML MML
emtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
emtr00401 Novobiocin biosynthesis SBML MML
emtr00410 beta-Alanine metabolism SBML MML
emtr00430 Taurine and hypotaurine metabolism SBML MML
emtr00440 Phosphonate and phosphinate metabolism SBML MML
emtr00450 Selenoamino acid metabolism SBML MML
emtr00460 (Undocumented) SBML MML
emtr00471 D-Glutamine and D-glutamate metabolism SBML MML
emtr00473 D-Alanine metabolism SBML MML
emtr00480 Glutathione metabolism SBML MML
emtr00500 Starch and sucrose metabolism SBML MML
emtr00510 (Undocumented) SBML MML
emtr00520 Amino sugar and nucleotide sugar metabolism SBML MML
emtr00521 Streptomycin biosynthesis SBML MML
emtr00530 (Undocumented) SBML MML
emtr00540 Lipopolysaccharide biosynthesis SBML MML
emtr00550 Peptidoglycan biosynthesis SBML MML
emtr00561 Glycerolipid metabolism SBML MML
emtr00562 Inositol phosphate metabolism SBML MML
emtr00564 Glycerophospholipid metabolism SBML MML
emtr00565 Ether lipid metabolism SBML MML
emtr00590 Arachidonic acid metabolism SBML MML
emtr00591 Linoleic acid metabolism SBML MML
emtr00592 alpha-Linolenic acid metabolism SBML MML
emtr00600 Sphingolipid metabolism SBML MML
emtr00620 Pyruvate metabolism SBML MML
emtr00621 (Undocumented) SBML MML
emtr00622 Toluene and xylene degradation SBML MML
emtr00623 2,4-Dichlorobenzoate degradation SBML MML
emtr00624 1- and 2-Methylnaphthalene degradation SBML MML
emtr00625 (Undocumented) SBML MML
emtr00626 Naphthalene and anthracene degradation SBML MML
emtr00627 1,4-Dichlorobenzene degradation SBML MML
emtr00628 Fluorene degradation SBML MML
emtr00629 Carbazole degradation SBML MML
emtr00630 Glyoxylate and dicarboxylate metabolism SBML MML
emtr00632 (Undocumented) SBML MML
emtr00640 Propanoate metabolism SBML MML
emtr00641 3-Chloroacrylic acid degradation SBML MML
emtr00642 Ethylbenzene degradation SBML MML
emtr00643 Styrene degradation SBML MML
emtr00650 Butanoate metabolism SBML MML
emtr00660 C5-Branched dibasic acid metabolism SBML MML
emtr00670 One carbon pool by folate SBML MML
emtr00680 Methane metabolism SBML MML
emtr00710 (Undocumented) SBML MML
emtr00720 (Undocumented) SBML MML
emtr00730 Thiamine metabolism SBML MML
emtr00740 Riboflavin metabolism SBML MML
emtr00750 Vitamin B6 metabolism SBML MML
emtr00760 Nicotinate and nicotinamide metabolism SBML MML
emtr00770 Pantothenate and CoA biosynthesis SBML MML
emtr00780 Biotin metabolism SBML MML
emtr00790 Folate biosynthesis SBML MML
emtr00791 Atrazine degradation SBML MML
emtr00830 Retinol metabolism SBML MML
emtr00860 Porphyrin and chlorophyll metabolism SBML MML
emtr00900 Terpenoid backbone biosynthesis SBML MML
emtr00901 (Undocumented) SBML MML
emtr00902 Monoterpenoid biosynthesis SBML MML
emtr00903 (Undocumented) SBML MML
emtr00904 (Undocumented) SBML MML
emtr00906 Carotenoid biosynthesis SBML MML
emtr00908 (Undocumented) SBML MML
emtr00910 Nitrogen metabolism SBML MML
emtr00920 Sulfur metabolism SBML MML
emtr00930 Caprolactam degradation SBML MML
emtr00940 (Undocumented) SBML MML
emtr00941 (Undocumented) SBML MML
emtr00944 (Undocumented) SBML MML
emtr00950 (Undocumented) SBML MML
emtr00960 (Undocumented) SBML MML
emtr00970 Aminoacyl-tRNA biosynthesis SBML MML
emtr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
emtr00982 (Undocumented) SBML MML
emtr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.