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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism egra: Gossypium raimondii (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
egra00010 Glycolysis / Gluconeogenesis SBML MML
egra00020 Citrate cycle (TCA cycle) SBML MML
egra00030 Pentose phosphate pathway SBML MML
egra00031 (Undocumented) SBML MML
egra00040 Pentose and glucuronate interconversions SBML MML
egra00051 Fructose and mannose metabolism SBML MML
egra00052 Galactose metabolism SBML MML
egra00053 Ascorbate and aldarate metabolism SBML MML
egra00061 Fatty acid biosynthesis SBML MML
egra00062 Fatty acid elongation in mitochondria SBML MML
egra00071 Fatty acid metabolism SBML MML
egra00072 Synthesis and degradation of ketone bodies SBML MML
egra00100 (Undocumented) SBML MML
egra00120 (Undocumented) SBML MML
egra00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
egra00140 (Undocumented) SBML MML
egra00150 Androgen and estrogen metabolism SBML MML
egra00220 (Undocumented) SBML MML
egra00230 Purine metabolism SBML MML
egra00240 Pyrimidine metabolism SBML MML
egra00251 (Undocumented) SBML MML
egra00252 (Undocumented) SBML MML
egra00260 Glycine, serine and threonine metabolism SBML MML
egra00271 (Undocumented) SBML MML
egra00272 (Undocumented) SBML MML
egra00280 Valine, leucine and isoleucine degradation SBML MML
egra00281 Geraniol degradation SBML MML
egra00290 Valine, leucine and isoleucine biosynthesis SBML MML
egra00300 Lysine biosynthesis SBML MML
egra00310 Lysine degradation SBML MML
egra00330 Arginine and proline metabolism SBML MML
egra00340 Histidine metabolism SBML MML
egra00350 Tyrosine metabolism SBML MML
egra00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
egra00360 Phenylalanine metabolism SBML MML
egra00361 gamma-Hexachlorocyclohexane degradation SBML MML
egra00362 (Undocumented) SBML MML
egra00380 Tryptophan metabolism SBML MML
egra00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
egra00401 Novobiocin biosynthesis SBML MML
egra00410 beta-Alanine metabolism SBML MML
egra00430 Taurine and hypotaurine metabolism SBML MML
egra00440 Phosphonate and phosphinate metabolism SBML MML
egra00450 Selenoamino acid metabolism SBML MML
egra00460 (Undocumented) SBML MML
egra00471 D-Glutamine and D-glutamate metabolism SBML MML
egra00480 Glutathione metabolism SBML MML
egra00500 Starch and sucrose metabolism SBML MML
egra00510 (Undocumented) SBML MML
egra00520 Amino sugar and nucleotide sugar metabolism SBML MML
egra00521 Streptomycin biosynthesis SBML MML
egra00530 (Undocumented) SBML MML
egra00540 Lipopolysaccharide biosynthesis SBML MML
egra00550 Peptidoglycan biosynthesis SBML MML
egra00561 Glycerolipid metabolism SBML MML
egra00562 Inositol phosphate metabolism SBML MML
egra00564 Glycerophospholipid metabolism SBML MML
egra00565 Ether lipid metabolism SBML MML
egra00590 Arachidonic acid metabolism SBML MML
egra00591 Linoleic acid metabolism SBML MML
egra00592 alpha-Linolenic acid metabolism SBML MML
egra00600 Sphingolipid metabolism SBML MML
egra00620 Pyruvate metabolism SBML MML
egra00624 1- and 2-Methylnaphthalene degradation SBML MML
egra00625 (Undocumented) SBML MML
egra00626 Naphthalene and anthracene degradation SBML MML
egra00628 Fluorene degradation SBML MML
egra00630 Glyoxylate and dicarboxylate metabolism SBML MML
egra00632 (Undocumented) SBML MML
egra00640 Propanoate metabolism SBML MML
egra00641 3-Chloroacrylic acid degradation SBML MML
egra00643 Styrene degradation SBML MML
egra00650 Butanoate metabolism SBML MML
egra00670 One carbon pool by folate SBML MML
egra00680 Methane metabolism SBML MML
egra00710 (Undocumented) SBML MML
egra00720 (Undocumented) SBML MML
egra00730 Thiamine metabolism SBML MML
egra00740 Riboflavin metabolism SBML MML
egra00750 Vitamin B6 metabolism SBML MML
egra00760 Nicotinate and nicotinamide metabolism SBML MML
egra00770 Pantothenate and CoA biosynthesis SBML MML
egra00780 Biotin metabolism SBML MML
egra00790 Folate biosynthesis SBML MML
egra00791 Atrazine degradation SBML MML
egra00860 Porphyrin and chlorophyll metabolism SBML MML
egra00900 Terpenoid backbone biosynthesis SBML MML
egra00902 Monoterpenoid biosynthesis SBML MML
egra00903 (Undocumented) SBML MML
egra00904 (Undocumented) SBML MML
egra00906 Carotenoid biosynthesis SBML MML
egra00908 (Undocumented) SBML MML
egra00910 Nitrogen metabolism SBML MML
egra00920 Sulfur metabolism SBML MML
egra00930 Caprolactam degradation SBML MML
egra00940 (Undocumented) SBML MML
egra00941 (Undocumented) SBML MML
egra00944 (Undocumented) SBML MML
egra00950 (Undocumented) SBML MML
egra00960 (Undocumented) SBML MML
egra00970 Aminoacyl-tRNA biosynthesis SBML MML
egra00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
egra00982 (Undocumented) SBML MML
egra00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.