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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism egma: Glycine max (soybean) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
egma00010 Glycolysis / Gluconeogenesis SBML MML
egma00020 Citrate cycle (TCA cycle) SBML MML
egma00030 Pentose phosphate pathway SBML MML
egma00031 (Undocumented) SBML MML
egma00040 Pentose and glucuronate interconversions SBML MML
egma00051 Fructose and mannose metabolism SBML MML
egma00052 Galactose metabolism SBML MML
egma00053 Ascorbate and aldarate metabolism SBML MML
egma00061 Fatty acid biosynthesis SBML MML
egma00062 Fatty acid elongation in mitochondria SBML MML
egma00071 Fatty acid metabolism SBML MML
egma00072 Synthesis and degradation of ketone bodies SBML MML
egma00100 (Undocumented) SBML MML
egma00120 (Undocumented) SBML MML
egma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
egma00140 (Undocumented) SBML MML
egma00150 Androgen and estrogen metabolism SBML MML
egma00220 (Undocumented) SBML MML
egma00230 Purine metabolism SBML MML
egma00240 Pyrimidine metabolism SBML MML
egma00251 (Undocumented) SBML MML
egma00252 (Undocumented) SBML MML
egma00260 Glycine, serine and threonine metabolism SBML MML
egma00271 (Undocumented) SBML MML
egma00272 (Undocumented) SBML MML
egma00280 Valine, leucine and isoleucine degradation SBML MML
egma00281 Geraniol degradation SBML MML
egma00290 Valine, leucine and isoleucine biosynthesis SBML MML
egma00300 Lysine biosynthesis SBML MML
egma00310 Lysine degradation SBML MML
egma00330 Arginine and proline metabolism SBML MML
egma00340 Histidine metabolism SBML MML
egma00350 Tyrosine metabolism SBML MML
egma00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
egma00360 Phenylalanine metabolism SBML MML
egma00361 gamma-Hexachlorocyclohexane degradation SBML MML
egma00362 (Undocumented) SBML MML
egma00363 Bisphenol A degradation SBML MML
egma00364 Fluorobenzoate degradation SBML MML
egma00380 Tryptophan metabolism SBML MML
egma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
egma00401 Novobiocin biosynthesis SBML MML
egma00410 beta-Alanine metabolism SBML MML
egma00430 Taurine and hypotaurine metabolism SBML MML
egma00440 Phosphonate and phosphinate metabolism SBML MML
egma00450 Selenoamino acid metabolism SBML MML
egma00460 (Undocumented) SBML MML
egma00471 D-Glutamine and D-glutamate metabolism SBML MML
egma00473 D-Alanine metabolism SBML MML
egma00480 Glutathione metabolism SBML MML
egma00500 Starch and sucrose metabolism SBML MML
egma00510 (Undocumented) SBML MML
egma00520 Amino sugar and nucleotide sugar metabolism SBML MML
egma00521 Streptomycin biosynthesis SBML MML
egma00523 Polyketide sugar unit biosynthesis SBML MML
egma00530 (Undocumented) SBML MML
egma00540 Lipopolysaccharide biosynthesis SBML MML
egma00550 Peptidoglycan biosynthesis SBML MML
egma00561 Glycerolipid metabolism SBML MML
egma00562 Inositol phosphate metabolism SBML MML
egma00564 Glycerophospholipid metabolism SBML MML
egma00565 Ether lipid metabolism SBML MML
egma00590 Arachidonic acid metabolism SBML MML
egma00591 Linoleic acid metabolism SBML MML
egma00592 alpha-Linolenic acid metabolism SBML MML
egma00600 Sphingolipid metabolism SBML MML
egma00620 Pyruvate metabolism SBML MML
egma00623 2,4-Dichlorobenzoate degradation SBML MML
egma00624 1- and 2-Methylnaphthalene degradation SBML MML
egma00625 (Undocumented) SBML MML
egma00626 Naphthalene and anthracene degradation SBML MML
egma00627 1,4-Dichlorobenzene degradation SBML MML
egma00628 Fluorene degradation SBML MML
egma00630 Glyoxylate and dicarboxylate metabolism SBML MML
egma00632 (Undocumented) SBML MML
egma00640 Propanoate metabolism SBML MML
egma00641 3-Chloroacrylic acid degradation SBML MML
egma00642 Ethylbenzene degradation SBML MML
egma00643 Styrene degradation SBML MML
egma00650 Butanoate metabolism SBML MML
egma00670 One carbon pool by folate SBML MML
egma00680 Methane metabolism SBML MML
egma00710 (Undocumented) SBML MML
egma00720 (Undocumented) SBML MML
egma00730 Thiamine metabolism SBML MML
egma00740 Riboflavin metabolism SBML MML
egma00750 Vitamin B6 metabolism SBML MML
egma00760 Nicotinate and nicotinamide metabolism SBML MML
egma00770 Pantothenate and CoA biosynthesis SBML MML
egma00780 Biotin metabolism SBML MML
egma00790 Folate biosynthesis SBML MML
egma00791 Atrazine degradation SBML MML
egma00860 Porphyrin and chlorophyll metabolism SBML MML
egma00900 Terpenoid backbone biosynthesis SBML MML
egma00901 (Undocumented) SBML MML
egma00902 Monoterpenoid biosynthesis SBML MML
egma00903 (Undocumented) SBML MML
egma00904 (Undocumented) SBML MML
egma00906 Carotenoid biosynthesis SBML MML
egma00908 (Undocumented) SBML MML
egma00910 Nitrogen metabolism SBML MML
egma00920 Sulfur metabolism SBML MML
egma00930 Caprolactam degradation SBML MML
egma00940 (Undocumented) SBML MML
egma00941 (Undocumented) SBML MML
egma00944 (Undocumented) SBML MML
egma00950 (Undocumented) SBML MML
egma00960 (Undocumented) SBML MML
egma00970 Aminoacyl-tRNA biosynthesis SBML MML
egma00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
egma00982 (Undocumented) SBML MML
egma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.