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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ecw: Escherichia coli E24377A

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ecw00010 Glycolysis / Gluconeogenesis SBML MML
ecw00020 Citrate cycle (TCA cycle) SBML MML
ecw00030 Pentose phosphate pathway SBML MML
ecw00040 Pentose and glucuronate interconversions SBML MML
ecw00051 Fructose and mannose metabolism SBML MML
ecw00052 Galactose metabolism SBML MML
ecw00053 Ascorbate and aldarate metabolism SBML MML
ecw00061 Fatty acid biosynthesis SBML MML
ecw00062 Fatty acid elongation in mitochondria SBML MML
ecw00071 Fatty acid metabolism SBML MML
ecw00072 Synthesis and degradation of ketone bodies SBML MML
ecw00100 (Undocumented) SBML MML
ecw00120 (Undocumented) SBML MML
ecw00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ecw00220 (Undocumented) SBML MML
ecw00230 Purine metabolism SBML MML
ecw00240 Pyrimidine metabolism SBML MML
ecw00251 (Undocumented) SBML MML
ecw00252 (Undocumented) SBML MML
ecw00260 Glycine, serine and threonine metabolism SBML MML
ecw00271 (Undocumented) SBML MML
ecw00272 (Undocumented) SBML MML
ecw00280 Valine, leucine and isoleucine degradation SBML MML
ecw00281 Geraniol degradation SBML MML
ecw00290 Valine, leucine and isoleucine biosynthesis SBML MML
ecw00300 Lysine biosynthesis SBML MML
ecw00310 Lysine degradation SBML MML
ecw00330 Arginine and proline metabolism SBML MML
ecw00340 Histidine metabolism SBML MML
ecw00350 Tyrosine metabolism SBML MML
ecw00360 Phenylalanine metabolism SBML MML
ecw00361 gamma-Hexachlorocyclohexane degradation SBML MML
ecw00362 (Undocumented) SBML MML
ecw00364 Fluorobenzoate degradation SBML MML
ecw00380 Tryptophan metabolism SBML MML
ecw00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ecw00401 Novobiocin biosynthesis SBML MML
ecw00410 beta-Alanine metabolism SBML MML
ecw00430 Taurine and hypotaurine metabolism SBML MML
ecw00450 Selenoamino acid metabolism SBML MML
ecw00460 (Undocumented) SBML MML
ecw00471 D-Glutamine and D-glutamate metabolism SBML MML
ecw00473 D-Alanine metabolism SBML MML
ecw00480 Glutathione metabolism SBML MML
ecw00500 Starch and sucrose metabolism SBML MML
ecw00520 Amino sugar and nucleotide sugar metabolism SBML MML
ecw00521 Streptomycin biosynthesis SBML MML
ecw00523 Polyketide sugar unit biosynthesis SBML MML
ecw00530 (Undocumented) SBML MML
ecw00540 Lipopolysaccharide biosynthesis SBML MML
ecw00550 Peptidoglycan biosynthesis SBML MML
ecw00561 Glycerolipid metabolism SBML MML
ecw00562 Inositol phosphate metabolism SBML MML
ecw00564 Glycerophospholipid metabolism SBML MML
ecw00590 Arachidonic acid metabolism SBML MML
ecw00592 alpha-Linolenic acid metabolism SBML MML
ecw00600 Sphingolipid metabolism SBML MML
ecw00620 Pyruvate metabolism SBML MML
ecw00621 (Undocumented) SBML MML
ecw00622 Toluene and xylene degradation SBML MML
ecw00624 1- and 2-Methylnaphthalene degradation SBML MML
ecw00626 Naphthalene and anthracene degradation SBML MML
ecw00627 1,4-Dichlorobenzene degradation SBML MML
ecw00628 Fluorene degradation SBML MML
ecw00629 Carbazole degradation SBML MML
ecw00630 Glyoxylate and dicarboxylate metabolism SBML MML
ecw00632 (Undocumented) SBML MML
ecw00633 Trinitrotoluene degradation SBML MML
ecw00640 Propanoate metabolism SBML MML
ecw00641 3-Chloroacrylic acid degradation SBML MML
ecw00642 Ethylbenzene degradation SBML MML
ecw00643 Styrene degradation SBML MML
ecw00650 Butanoate metabolism SBML MML
ecw00660 C5-Branched dibasic acid metabolism SBML MML
ecw00670 One carbon pool by folate SBML MML
ecw00680 Methane metabolism SBML MML
ecw00710 (Undocumented) SBML MML
ecw00720 (Undocumented) SBML MML
ecw00730 Thiamine metabolism SBML MML
ecw00740 Riboflavin metabolism SBML MML
ecw00750 Vitamin B6 metabolism SBML MML
ecw00760 Nicotinate and nicotinamide metabolism SBML MML
ecw00770 Pantothenate and CoA biosynthesis SBML MML
ecw00780 Biotin metabolism SBML MML
ecw00785 Lipoic acid metabolism SBML MML
ecw00790 Folate biosynthesis SBML MML
ecw00791 Atrazine degradation SBML MML
ecw00860 Porphyrin and chlorophyll metabolism SBML MML
ecw00900 Terpenoid backbone biosynthesis SBML MML
ecw00903 (Undocumented) SBML MML
ecw00910 Nitrogen metabolism SBML MML
ecw00920 Sulfur metabolism SBML MML
ecw00930 Caprolactam degradation SBML MML
ecw00940 (Undocumented) SBML MML
ecw00950 (Undocumented) SBML MML
ecw00960 (Undocumented) SBML MML
ecw00970 Aminoacyl-tRNA biosynthesis SBML MML
ecw00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ecw00982 (Undocumented) SBML MML
ecw00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.