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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ecs: Escherichia coli O157 Sakai (EHEC)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ecs00010 Glycolysis / Gluconeogenesis SBML MML
ecs00020 Citrate cycle (TCA cycle) SBML MML
ecs00030 Pentose phosphate pathway SBML MML
ecs00040 Pentose and glucuronate interconversions SBML MML
ecs00051 Fructose and mannose metabolism SBML MML
ecs00052 Galactose metabolism SBML MML
ecs00053 Ascorbate and aldarate metabolism SBML MML
ecs00061 Fatty acid biosynthesis SBML MML
ecs00062 Fatty acid elongation in mitochondria SBML MML
ecs00071 Fatty acid metabolism SBML MML
ecs00100 (Undocumented) SBML MML
ecs00120 (Undocumented) SBML MML
ecs00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ecs00150 Androgen and estrogen metabolism SBML MML
ecs00220 (Undocumented) SBML MML
ecs00230 Purine metabolism SBML MML
ecs00240 Pyrimidine metabolism SBML MML
ecs00251 (Undocumented) SBML MML
ecs00252 (Undocumented) SBML MML
ecs00260 Glycine, serine and threonine metabolism SBML MML
ecs00271 (Undocumented) SBML MML
ecs00272 (Undocumented) SBML MML
ecs00280 Valine, leucine and isoleucine degradation SBML MML
ecs00281 Geraniol degradation SBML MML
ecs00290 Valine, leucine and isoleucine biosynthesis SBML MML
ecs00300 Lysine biosynthesis SBML MML
ecs00310 Lysine degradation SBML MML
ecs00330 Arginine and proline metabolism SBML MML
ecs00340 Histidine metabolism SBML MML
ecs00350 Tyrosine metabolism SBML MML
ecs00360 Phenylalanine metabolism SBML MML
ecs00361 gamma-Hexachlorocyclohexane degradation SBML MML
ecs00362 (Undocumented) SBML MML
ecs00364 Fluorobenzoate degradation SBML MML
ecs00380 Tryptophan metabolism SBML MML
ecs00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ecs00401 Novobiocin biosynthesis SBML MML
ecs00410 beta-Alanine metabolism SBML MML
ecs00430 Taurine and hypotaurine metabolism SBML MML
ecs00450 Selenoamino acid metabolism SBML MML
ecs00460 (Undocumented) SBML MML
ecs00471 D-Glutamine and D-glutamate metabolism SBML MML
ecs00473 D-Alanine metabolism SBML MML
ecs00480 Glutathione metabolism SBML MML
ecs00500 Starch and sucrose metabolism SBML MML
ecs00520 Amino sugar and nucleotide sugar metabolism SBML MML
ecs00521 Streptomycin biosynthesis SBML MML
ecs00523 Polyketide sugar unit biosynthesis SBML MML
ecs00530 (Undocumented) SBML MML
ecs00540 Lipopolysaccharide biosynthesis SBML MML
ecs00550 Peptidoglycan biosynthesis SBML MML
ecs00561 Glycerolipid metabolism SBML MML
ecs00562 Inositol phosphate metabolism SBML MML
ecs00564 Glycerophospholipid metabolism SBML MML
ecs00590 Arachidonic acid metabolism SBML MML
ecs00592 alpha-Linolenic acid metabolism SBML MML
ecs00600 Sphingolipid metabolism SBML MML
ecs00620 Pyruvate metabolism SBML MML
ecs00621 (Undocumented) SBML MML
ecs00622 Toluene and xylene degradation SBML MML
ecs00624 1- and 2-Methylnaphthalene degradation SBML MML
ecs00626 Naphthalene and anthracene degradation SBML MML
ecs00627 1,4-Dichlorobenzene degradation SBML MML
ecs00628 Fluorene degradation SBML MML
ecs00629 Carbazole degradation SBML MML
ecs00630 Glyoxylate and dicarboxylate metabolism SBML MML
ecs00632 (Undocumented) SBML MML
ecs00633 Trinitrotoluene degradation SBML MML
ecs00640 Propanoate metabolism SBML MML
ecs00641 3-Chloroacrylic acid degradation SBML MML
ecs00642 Ethylbenzene degradation SBML MML
ecs00643 Styrene degradation SBML MML
ecs00650 Butanoate metabolism SBML MML
ecs00660 C5-Branched dibasic acid metabolism SBML MML
ecs00670 One carbon pool by folate SBML MML
ecs00680 Methane metabolism SBML MML
ecs00710 (Undocumented) SBML MML
ecs00720 (Undocumented) SBML MML
ecs00730 Thiamine metabolism SBML MML
ecs00740 Riboflavin metabolism SBML MML
ecs00750 Vitamin B6 metabolism SBML MML
ecs00760 Nicotinate and nicotinamide metabolism SBML MML
ecs00770 Pantothenate and CoA biosynthesis SBML MML
ecs00780 Biotin metabolism SBML MML
ecs00785 Lipoic acid metabolism SBML MML
ecs00790 Folate biosynthesis SBML MML
ecs00791 Atrazine degradation SBML MML
ecs00860 Porphyrin and chlorophyll metabolism SBML MML
ecs00900 Terpenoid backbone biosynthesis SBML MML
ecs00903 (Undocumented) SBML MML
ecs00910 Nitrogen metabolism SBML MML
ecs00920 Sulfur metabolism SBML MML
ecs00930 Caprolactam degradation SBML MML
ecs00940 (Undocumented) SBML MML
ecs00950 (Undocumented) SBML MML
ecs00960 (Undocumented) SBML MML
ecs00970 Aminoacyl-tRNA biosynthesis SBML MML
ecs00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ecs00982 (Undocumented) SBML MML
ecs00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.