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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism eco: Escherichia coli K-12 MG1655

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
eco00010 Glycolysis / Gluconeogenesis SBML MML
eco00020 Citrate cycle (TCA cycle) SBML MML
eco00030 Pentose phosphate pathway SBML MML
eco00040 Pentose and glucuronate interconversions SBML MML
eco00051 Fructose and mannose metabolism SBML MML
eco00052 Galactose metabolism SBML MML
eco00053 Ascorbate and aldarate metabolism SBML MML
eco00061 Fatty acid biosynthesis SBML MML
eco00062 Fatty acid elongation in mitochondria SBML MML
eco00071 Fatty acid metabolism SBML MML
eco00100 (Undocumented) SBML MML
eco00120 (Undocumented) SBML MML
eco00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
eco00150 Androgen and estrogen metabolism SBML MML
eco00220 (Undocumented) SBML MML
eco00230 Purine metabolism SBML MML
eco00240 Pyrimidine metabolism SBML MML
eco00251 (Undocumented) SBML MML
eco00252 (Undocumented) SBML MML
eco00260 Glycine, serine and threonine metabolism SBML MML
eco00271 (Undocumented) SBML MML
eco00272 (Undocumented) SBML MML
eco00280 Valine, leucine and isoleucine degradation SBML MML
eco00281 Geraniol degradation SBML MML
eco00290 Valine, leucine and isoleucine biosynthesis SBML MML
eco00300 Lysine biosynthesis SBML MML
eco00310 Lysine degradation SBML MML
eco00330 Arginine and proline metabolism SBML MML
eco00340 Histidine metabolism SBML MML
eco00350 Tyrosine metabolism SBML MML
eco00360 Phenylalanine metabolism SBML MML
eco00361 gamma-Hexachlorocyclohexane degradation SBML MML
eco00362 (Undocumented) SBML MML
eco00364 Fluorobenzoate degradation SBML MML
eco00380 Tryptophan metabolism SBML MML
eco00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
eco00401 Novobiocin biosynthesis SBML MML
eco00410 beta-Alanine metabolism SBML MML
eco00430 Taurine and hypotaurine metabolism SBML MML
eco00450 Selenoamino acid metabolism SBML MML
eco00460 (Undocumented) SBML MML
eco00471 D-Glutamine and D-glutamate metabolism SBML MML
eco00473 D-Alanine metabolism SBML MML
eco00480 Glutathione metabolism SBML MML
eco00500 Starch and sucrose metabolism SBML MML
eco00520 Amino sugar and nucleotide sugar metabolism SBML MML
eco00521 Streptomycin biosynthesis SBML MML
eco00523 Polyketide sugar unit biosynthesis SBML MML
eco00530 (Undocumented) SBML MML
eco00540 Lipopolysaccharide biosynthesis SBML MML
eco00550 Peptidoglycan biosynthesis SBML MML
eco00561 Glycerolipid metabolism SBML MML
eco00562 Inositol phosphate metabolism SBML MML
eco00564 Glycerophospholipid metabolism SBML MML
eco00590 Arachidonic acid metabolism SBML MML
eco00592 alpha-Linolenic acid metabolism SBML MML
eco00600 Sphingolipid metabolism SBML MML
eco00620 Pyruvate metabolism SBML MML
eco00621 (Undocumented) SBML MML
eco00622 Toluene and xylene degradation SBML MML
eco00624 1- and 2-Methylnaphthalene degradation SBML MML
eco00626 Naphthalene and anthracene degradation SBML MML
eco00627 1,4-Dichlorobenzene degradation SBML MML
eco00628 Fluorene degradation SBML MML
eco00629 Carbazole degradation SBML MML
eco00630 Glyoxylate and dicarboxylate metabolism SBML MML
eco00632 (Undocumented) SBML MML
eco00633 Trinitrotoluene degradation SBML MML
eco00640 Propanoate metabolism SBML MML
eco00641 3-Chloroacrylic acid degradation SBML MML
eco00642 Ethylbenzene degradation SBML MML
eco00643 Styrene degradation SBML MML
eco00650 Butanoate metabolism SBML MML
eco00660 C5-Branched dibasic acid metabolism SBML MML
eco00670 One carbon pool by folate SBML MML
eco00680 Methane metabolism SBML MML
eco00710 (Undocumented) SBML MML
eco00720 (Undocumented) SBML MML
eco00730 Thiamine metabolism SBML MML
eco00740 Riboflavin metabolism SBML MML
eco00750 Vitamin B6 metabolism SBML MML
eco00760 Nicotinate and nicotinamide metabolism SBML MML
eco00770 Pantothenate and CoA biosynthesis SBML MML
eco00780 Biotin metabolism SBML MML
eco00785 Lipoic acid metabolism SBML MML
eco00790 Folate biosynthesis SBML MML
eco00791 Atrazine degradation SBML MML
eco00860 Porphyrin and chlorophyll metabolism SBML MML
eco00900 Terpenoid backbone biosynthesis SBML MML
eco00903 (Undocumented) SBML MML
eco00910 Nitrogen metabolism SBML MML
eco00920 Sulfur metabolism SBML MML
eco00930 Caprolactam degradation SBML MML
eco00940 (Undocumented) SBML MML
eco00950 (Undocumented) SBML MML
eco00960 (Undocumented) SBML MML
eco00970 Aminoacyl-tRNA biosynthesis SBML MML
eco00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
eco00982 (Undocumented) SBML MML
eco00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.